View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20148_low_19 (Length: 403)

Name: NF20148_low_19
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20148_low_19
NF20148_low_19
[»] chr4 (4 HSPs)
chr4 (220-391)||(35186341-35186512)
chr4 (152-215)||(35478207-35478270)
chr4 (170-221)||(41764195-41764246)
chr4 (271-383)||(37804953-37805065)
[»] chr1 (5 HSPs)
chr1 (9-116)||(41405357-41405464)
chr1 (9-111)||(51679951-51680053)
chr1 (149-215)||(41405264-41405330)
chr1 (149-219)||(51679855-51679925)
chr1 (149-220)||(24764161-24764232)
[»] chr7 (6 HSPs)
chr7 (15-113)||(4093157-4093255)
chr7 (149-220)||(4093288-4093359)
chr7 (149-220)||(48072286-48072357)
chr7 (151-215)||(20056528-20056592)
chr7 (171-204)||(3256803-3256836)
chr7 (173-221)||(37357348-37357396)
[»] chr3 (2 HSPs)
chr3 (149-215)||(3267700-3267766)
chr3 (149-215)||(43591523-43591589)
[»] chr8 (1 HSPs)
chr8 (149-215)||(38819656-38819722)
[»] chr5 (1 HSPs)
chr5 (149-215)||(8224403-8224469)
[»] chr2 (1 HSPs)
chr2 (150-192)||(44002004-44002046)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 2e-87; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 220 - 391
Target Start/End: Complemental strand, 35186512 - 35186341
Alignment:
Q  220 tttacgtaattgatatacctatgtttatttaggaattcttgtgtgttatgttgttctttatccagccaatattacatcgaacttaagagataaatcaata 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  35186512 tttacgtaattgatatacctatgtttatttaggaattcttgtgtgttatgttgttctttatccagccaatattacatcgagctcaagagataaatcaata 35186413  T
Q  320 ctaaccctggaattgataactcgagctagaatagttattcactagataattattttagggatatcaacttat 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35186412 ctaaccctggaattgataactcgagctagaatagttattcactagataattattttagggatatcaacttat 35186341  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 35478207 - 35478270
Alignment:
Q  152 gtataaagctacagtgacatatggtgtctgtattgtgtttggatttttgtgttcatctatcatt 215  Q
    ||||||| |||||||| |||| | |||||||||||||||||  ||||||||||||| |||||||    
T  35478207 gtataaaactacagtgtcatacgatgtctgtattgtgtttgattttttgtgttcatttatcatt 35478270  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 41764195 - 41764246
Alignment:
Q  170 atatggtgtctgtattgtgtttggatttttgtgttcatctatcattcctgtt 221  Q
    ||||||||||||||||||||||| |  ||||||| ||| |||||||||||||    
T  41764195 atatggtgtctgtattgtgtttgaaaatttgtgtccatttatcattcctgtt 41764246  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 383
Target Start/End: Original strand, 37804953 - 37805065
Alignment:
Q  271 tgttctttatccagccaatattacatcgaacttaagagataaatcaatactaaccctggaattgataactcgagctagaatagttattcactagataatt 370  Q
    ||||||||||| ||| ||||||  || |||||||||  |||| ||| |||||||||  |  || |||||| || ||||||||  ||||||||||||||||    
T  37804953 tgttctttatctagctaatattgaattgaacttaaggaataattcattactaacccaaggttttataactggatctagaataactattcactagataatt 37805052  T
Q  371 attttagggatat 383  Q
     | |||| |||||    
T  37805053 gtcttagagatat 37805065  T

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Target: chr1 (Bit Score: 96; Significance: 6e-47; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 41405464 - 41405357
Alignment:
Q  9 agcagagacgacgacggtgatcggtgagagaagttacaacggcggcggtggctggagaaccgacgttgaacatagagaaggatggccgagagagatggtg 108  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41405464 agcagtgacgacggcggtgatcggtgagagaagttacaacggcggcggtggctggagaaccggcgttgaacatagagaaggatggccgagagagatggtg 41405365  T
Q  109 agagaagg 116  Q
    ||||||||    
T  41405364 agagaagg 41405357  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 9 - 111
Target Start/End: Complemental strand, 51680053 - 51679951
Alignment:
Q  9 agcagagacgacgacggtgatcggtgagagaagttacaacggcggcggtggctggagaaccgacgttgaacatagagaaggatggccgagagagatggtg 108  Q
    ||||| ||||||| |||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  51680053 agcagtgacgacggcggtgattagtgagagaagttacaacggcggcggtggctggagaaccggcgttgaacatagagaaggatggccgagagagatggtg 51679954  T
Q  109 aga 111  Q
    |||    
T  51679953 aga 51679951  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 41405330 - 41405264
Alignment:
Q  149 gatgtataaagctacagtgacatatggtgtctgtattgtgtttggatttttgtgttcatctatcatt 215  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||    
T  41405330 gatgtataaagctacagtgatatatggtgtctgtattgtgtttggatttttgtgtacttctatcatt 41405264  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 51679925 - 51679855
Alignment:
Q  149 gatgtataaagctacagtgacatatggtgtctgtattgtgtttggatttttgtgttcatctatcattcctg 219  Q
    |||||||||| ||| |||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||    
T  51679925 gatgtataaaactagagtgacatatggcgtctgtattgtgtttggttttttgtgttcatttatcattcctg 51679855  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 24764161 - 24764232
Alignment:
Q  149 gatgtataaagctacagtgacatatggtgtctgtattgtgtttggatttttgtgttcatctatcattcctgt 220  Q
    ||||||||| |||||||||| ||||| |||||||||||||||||  ||||||||||||  ||||||||||||    
T  24764161 gatgtataatgctacagtgatatatgatgtctgtattgtgtttgattttttgtgttcacttatcattcctgt 24764232  T

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Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 4093157 - 4093255
Alignment:
Q  15 gacgacgacggtgatcggtgagagaagttacaacggcggcggtggctggagaaccgacgttgaacatagagaaggatggccgagagagatggtgagaga 113  Q
    |||||||||||||||| |||||||||||||||||| ||||||||| | |||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  4093157 gacgacgacggtgatcagtgagagaagttacaacgacggcggtggttagagaaccggcgttgaacatagagaaggatggccgggagagatggtgagaga 4093255  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 4093288 - 4093359
Alignment:
Q  149 gatgtataaagctacagtgacatatggtgtctgtattgtgtttggatttttgtgttcatctatcattcctgt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||| ||||    
T  4093288 gatgtataaagctacagtgacatatggtgtctgtattgtgtttagttttttgtgttcatttatcatttctgt 4093359  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 48072286 - 48072357
Alignment:
Q  149 gatgtataaagctacagtgacatatggtgtctgtattgtgtttggatttttgtgttcatctatcattcctgt 220  Q
    ||||||||| |||||||| |||||||||||||||||||||||||| |||||||||| | |||||||| ||||    
T  48072286 gatgtataatgctacagtcacatatggtgtctgtattgtgtttggttttttgtgtttaactatcatttctgt 48072357  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 20056528 - 20056592
Alignment:
Q  151 tgtataaagctacagtgacatatggtgtctgtattgtgtttggatttttgtgttcatctatcatt 215  Q
    |||||||||||||||    |||| |||||||||||||||||| |||||||| ||||| |||||||    
T  20056528 tgtataaagctacagaactatatagtgtctgtattgtgtttgcatttttgtattcatttatcatt 20056592  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 3256836 - 3256803
Alignment:
Q  171 tatggtgtctgtattgtgtttggatttttgtgtt 204  Q
    |||||||||| |||||||||||||||||||||||    
T  3256836 tatggtgtctatattgtgtttggatttttgtgtt 3256803  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 37357348 - 37357396
Alignment:
Q  173 tggtgtctgtattgtgtttggatttttgtgttcatctatcattcctgtt 221  Q
    ||||||||||||||||| ||  ||||||||||||| ||||||| |||||    
T  37357348 tggtgtctgtattgtgtatgtttttttgtgttcatgtatcattgctgtt 37357396  T

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Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 3267700 - 3267766
Alignment:
Q  149 gatgtataaagctacagtgacatatggtgtctgtattgtgtttggatttttgtgttcatctatcatt 215  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||  |||||||    
T  3267700 gatgtataaagctacagtgatgtatggtgtctgtattgtgtttggatttttgtgttcacttatcatt 3267766  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 43591523 - 43591589
Alignment:
Q  149 gatgtataaagctacagtgacatatggtgtctgtattgtgtttggatttttgtgttcatctatcatt 215  Q
    ||||||||||||||||||  |||||||||||||||||||||||| |||||||||| ||| |||||||    
T  43591523 gatgtataaagctacagtaccatatggtgtctgtattgtgtttgcatttttgtgtccatttatcatt 43591589  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 38819656 - 38819722
Alignment:
Q  149 gatgtataaagctacagtgacatatggtgtctgtattgtgtttggatttttgtgttcatctatcatt 215  Q
    ||||||||||||||||||  ||||||||||| |||||||||||| |||||||||| ||| |||||||    
T  38819656 gatgtataaagctacagtaccatatggtgtccgtattgtgtttgcatttttgtgtccatttatcatt 38819722  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 8224469 - 8224403
Alignment:
Q  149 gatgtataaagctacagtgacatatggtgtctgtattgtgtttggatttttgtgttcatctatcatt 215  Q
    |||||||||||||| |||  |||||||||||||||||||||||| |||||||||| ||| |||||||    
T  8224469 gatgtataaagctagagtaccatatggtgtctgtattgtgtttgcatttttgtgtccatttatcatt 8224403  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 44002004 - 44002046
Alignment:
Q  150 atgtataaagctacagtgacatatggtgtctgtattgtgtttg 192  Q
    |||||||| |||||||| ||||||||||| |||||||||||||    
T  44002004 atgtataatgctacagtcacatatggtgtttgtattgtgtttg 44002046  T

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