View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20148_low_2 (Length: 693)

Name: NF20148_low_2
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20148_low_2
NF20148_low_2
[»] chr4 (1 HSPs)
chr4 (17-693)||(28783670-28784366)


Alignment Details
Target: chr4 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 17 - 693
Target Start/End: Complemental strand, 28784366 - 28783670
Alignment:
Q  17 aaaatcctatactataataactagatccatgaatttgatactcatagttccnnnnnnnaactattat----gacttactcctctctaacaaaatataata 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       ||| |||||    || |||||||||||||| |||||||||||    
T  28784366 aaaatcctatactataataactagatccatgaatttgatactcatagttcctttttttaaccattatatatgagttactcctctctaataaaatataata 28784267  T
Q  113 catgtatctgatccaaatgttgacaagatgcatgtaatttt-------------gttacaaagagattacaattt---aagagaaaagattgatttcagt 196  Q
    |||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||   ||||||||||||||||||||||    
T  28784266 catgtatctgatccaaatgttgacaagatgcatgtaattttttccttttgttttgttacaaagagattacaattttttaagagaaaagattgatttcagt 28784167  T
Q  197 tacattcttgtgcataattgttttgcagggttacatgtaacaattgactgcaaagaagcaaatggacattttaaaacaagaggggcaggtgagcttgata 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28784166 tacattcttgtgcataattgttttgcagggttacatgtaacaattgactgcaaagaagcaaatggacattttaaaacaagaggggcaggtgagcttgata 28784067  T
Q  297 aaaatggaaatttcaaagtatctcttcctcaagaaattgtaaatgaaggtgaattgaaagaagaatgttatgctcagctgcatagtgcaacagctgcacc 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28784066 aaaatggaaatttcaaagtatctcttcctcaagaaattgtaaatgaaggtgaattgaaagaagaatgttatgctcagctgcatagtgcaacagctgcacc 28783967  T
Q  397 ttgtcctgctcatgatggcctgcaaaacaccaaaattgtcatcaagtcaaaatctgatgacaaacacaccctaagtactgctgctgctggtaaactcaaa 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28783966 ttgtcctgctcatgatggcctgcaaaacaccaaaattgtcatcaagtcaaaatctgatgacaaacacaccctaagtactgctgctgctggtaaactcaaa 28783867  T
Q  497 ttttcatcagcaacatgtacctccaaattcttttggcctctcttcaaacatcctctttttcctaagcttcctcatcctgatttacctcaatttcccccta 596  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28783866 ttttcatcagcaacatgtacctccaaattcttttggcctctcttcaaacatcctctttttcctaagcttcctcatcctgatttacctcaatttcccccta 28783767  T
Q  597 aagtttttccaacatttccaccaaagattttccataaacaccctctttttcctcctgttcctatctacaagaaacctccctttcctcatattcctat 693  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  28783766 aagtttttccaacatttccaccaaagattttccataaacaccctctttttcctcctgttcctatctacaagaaacctccattttctcatattcctat 28783670  T

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