View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20148_low_20 (Length: 402)
Name: NF20148_low_20
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20148_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 29 - 392
Target Start/End: Original strand, 3429834 - 3430210
Alignment:
| Q |
29 |
aaggaatgaacatcttaattagcaattttgatcagacataagtgaggctgtttatattgatcacgactatat--gaaaaggtttgttaaggaacaaatgc |
126 |
Q |
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| T |
3429834 |
aaggaatgaacatcttaattagcaattttgatcagacataagtgaggctgtttatattgatcacgcctatatatgaaaaggtttgttaaggaacaaatgc |
3429933 |
T |
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| Q |
127 |
aaaccaattgtaattaat------taggtctatggagccacatgtatta---gattgggattgt--tctaaccaataacatgttggagagataaccaacc |
215 |
Q |
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| T |
3429934 |
aaaccaattgtaatcaatgacaattaggtctatggagccacatgtattattagattgggattgtattctaaccaataacatgttggagagataaccaacc |
3430033 |
T |
|
| Q |
216 |
gaacatgactcctaaccaggctttttatacaatgatctaatactaaggatcccactcttgatcttccatcaaattgaatttaagttttgatataccaatt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3430034 |
gaacatgactcctaaccaggctttttatacaatgatctaatactaaggatcccactcttgatcttccatcaaattgaatttaagttttgatataccaatt |
3430133 |
T |
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| Q |
316 |
gccggagagtctaaggaagtgtcaggagcaacaacaaccgagagaaacaagaggccattatgtcaaccttgtctgtg |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3430134 |
gccggagagtctaaggaagtgtcaggagcaacaacaaccgagagaaacaagaggccattatgtcaaccttgtttgtg |
3430210 |
T |
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