View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20148_low_22 (Length: 390)

Name: NF20148_low_22
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20148_low_22
NF20148_low_22
[»] chr5 (9 HSPs)
chr5 (1-376)||(32447882-32448258)
chr5 (248-361)||(28253457-28253570)
chr5 (237-348)||(29263414-29263525)
chr5 (303-361)||(28142588-28142646)
chr5 (260-349)||(26307791-26307880)
chr5 (307-363)||(19904365-19904421)
chr5 (301-348)||(31227272-31227319)
chr5 (249-347)||(18223184-18223282)
chr5 (260-322)||(27921252-27921314)
[»] chr4 (4 HSPs)
chr4 (237-359)||(19900734-19900856)
chr4 (237-346)||(22526520-22526629)
chr4 (303-361)||(40215150-40215208)
chr4 (248-325)||(23080496-23080572)
[»] chr7 (8 HSPs)
chr7 (237-348)||(5797666-5797777)
chr7 (237-355)||(21884981-21885099)
chr7 (237-354)||(21912306-21912423)
chr7 (260-322)||(9062982-9063044)
chr7 (235-325)||(20174734-20174824)
chr7 (260-322)||(23587810-23587872)
chr7 (237-279)||(36117449-36117491)
chr7 (305-361)||(36117377-36117432)
[»] chr6 (2 HSPs)
chr6 (237-356)||(24188056-24188175)
chr6 (239-348)||(28585863-28585972)
[»] chr3 (4 HSPs)
chr3 (261-322)||(14183229-14183290)
chr3 (239-355)||(23055988-23056104)
chr3 (248-278)||(8557032-8557062)
chr3 (303-357)||(21074349-21074403)
[»] chr8 (2 HSPs)
chr8 (237-340)||(17965199-17965302)
chr8 (250-325)||(26008222-26008297)
[»] chr2 (2 HSPs)
chr2 (249-340)||(45621722-45621813)
chr2 (251-288)||(19287498-19287535)
[»] scaffold0136 (1 HSPs)
scaffold0136 (237-280)||(15366-15409)
[»] scaffold0019 (1 HSPs)
scaffold0019 (237-280)||(11379-11422)
[»] chr1 (2 HSPs)
chr1 (301-348)||(26810093-26810140)
chr1 (247-348)||(6501385-6501486)


Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 32447882 - 32448258
Alignment:
Q  1 aaccatgatgatgatgacgatgattcttgaaacactgaagcggaaagcggcaaaatagtgatgagaagagggaaagaccaaaagtttaagggcttaggtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32447882 aaccatgatgatgatgacgatgattcttgaaacactgaagcggaaagcggcaaaatagtgatgagaagagggaaagaccaaaagtttaagggcttaggtc 32447981  T
Q  101 aatgtataatttcaattcaaaaatgttttcatttaaagttctctcgtacgagtaaataaataagtatatttgtga--nnnnnnnnnctcgagggaaagta 198  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||           ||||||||||||||    
T  32447982 aatgtataatttcaattcaaaaatgttttcatttaaaattctctcgtacgagtaaataaataagtatatttgtgatttttttttttctcgagggaaagta 32448081  T
Q  199 tatttgtgatatattcttnnnnnnntatatttgtgatatgcaacagaacaaagtttacctcttttgattgcagaatgttagcagtggttaaaatttttcg 298  Q
    |||||||||||||| |||       ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |  |||||||||||||| |    
T  32448082 tatttgtgatatatccttaaaaaaatatatttgtgatatgcaacggaacaaagtttacct-ttttgattgcagaatgttaacgatggttaaaattttttg 32448180  T
Q  299 ggtcctctctatttatttgttggaattccttaacaatcaagttttattcagcttttagcatttctgatccggtgatga 376  Q
     |||  ||||||||||||||||||||| ||||||| |||||| ||||||| |||||||||||| ||||||||||||||    
T  32448181 agtctcctctatttatttgttggaattacttaacagtcaagtcttattcaacttttagcatttttgatccggtgatga 32448258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 248 - 361
Target Start/End: Original strand, 28253457 - 28253570
Alignment:
Q  248 aaagtttacctcttttgattgcagaatgttagcagtggttaaaatttttcgggtcctctctatttatttgttggaattccttaacaatcaagttttattc 347  Q
    ||||||||||| ||||||||||| ||||||||  |||||||| ||| ||||  ||||| ||||||||||||||||||| |||||||||||||| ||||||    
T  28253457 aaagtttacctgttttgattgcaaaatgttagtggtggttaatattattcgaatcctccctatttatttgttggaattacttaacaatcaagtcttattc 28253556  T
Q  348 agcttttagcattt 361  Q
    |  |||||||||||    
T  28253557 aaattttagcattt 28253570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 237 - 348
Target Start/End: Complemental strand, 29263525 - 29263414
Alignment:
Q  237 tgcaacagaacaaagtttacctcttttgattgcagaatgttagcagtggttaaaatttttcgggtcctctctatttatttgttggaattccttaacaatc 336  Q
    ||||||| | |||||||||||||||||||||| | ||||||||| |||||||  ||| ||||  ||| ||||||||| ||||| ||||| | ||||| ||    
T  29263525 tgcaacaaagcaaagtttacctcttttgattgtataatgttagcggtggttaggattcttcgaatcccctctatttaattgttagaattacataacagtc 29263426  T
Q  337 aagttttattca 348  Q
    |||| |||||||    
T  29263425 aagtcttattca 29263414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 303 - 361
Target Start/End: Original strand, 28142588 - 28142646
Alignment:
Q  303 ctctctatttatttgttggaattccttaacaatcaagttttattcagcttttagcattt 361  Q
    ||||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||    
T  28142588 ctctctatttatttgttggaattacttaacattaaagtcttattcagcttttagcattt 28142646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 349
Target Start/End: Original strand, 26307791 - 26307880
Alignment:
Q  260 ttttgattgcagaatgttagcagtggttaaaatttttcgggtcctctctatttatttgttggaattccttaacaatcaagttttattcag 349  Q
    ||||||||||||||||||||| | |||||  ||  || |  |||  ||||||||| |||| ||||| |||||||||||||||||||||||    
T  26307791 ttttgattgcagaatgttagcggcggttaggatactttgaatcccatctatttatatgttagaattacttaacaatcaagttttattcag 26307880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 363
Target Start/End: Complemental strand, 19904421 - 19904365
Alignment:
Q  307 ctatttatttgttggaattccttaacaatcaagttttattcagcttttagcatttct 363  Q
    ||||||||||| ||||||| ||||| | |||||| ||||||| ||||||||||||||    
T  19904421 ctatttatttgatggaattacttaatagtcaagtcttattcaacttttagcatttct 19904365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 348
Target Start/End: Complemental strand, 31227319 - 31227272
Alignment:
Q  301 tcctctctatttatttgttggaattccttaacaatcaagttttattca 348  Q
    ||||||||||||| ||||||||| | ||||||| ||||||||||||||    
T  31227319 tcctctctatttagttgttggaactacttaacagtcaagttttattca 31227272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 347
Target Start/End: Original strand, 18223184 - 18223282
Alignment:
Q  249 aagtttacctcttttgattgcagaatgttagcagtggttaaaatttttcgggtcctctctatttatttgttggaattccttaacaatcaagttttattc 347  Q
    |||||||||| |||| || |||||||||||| || || ||| ||| || |  | | ||||||||| ||||||||||| | |||||||||||| ||||||    
T  18223184 aagtttacctgttttaatggcagaatgttagaagcggctaagattatttgaataccctctatttaattgttggaattacgtaacaatcaagtcttattc 18223282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 322
Target Start/End: Complemental strand, 27921314 - 27921252
Alignment:
Q  260 ttttgattgcagaatgttagcagtggttaaaatttttcgggtcctctctatttatttgttgga 322  Q
    ||||||||||||||||||||||| |||||  ||| ||||  ||| || |||||||||||||||    
T  27921314 ttttgattgcagaatgttagcagaggttaggattcttcgaatcccctttatttatttgttgga 27921252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 237 - 359
Target Start/End: Original strand, 19900734 - 19900856
Alignment:
Q  237 tgcaacagaacaaagtttacctcttttgattgcagaatgttagcagtggttaaaatttttcgggtcctctctatttatttgttggaattccttaacaatc 336  Q
    ||||||| | |||||||||||| ||||||||||| ||||||||| | |||||  ||| ||||| ||| || |||||||||||||||||| ||||||  ||    
T  19900734 tgcaacatagcaaagtttacctgttttgattgcataatgttagcggaggttaggattcttcggatcccctatatttatttgttggaattacttaactgtc 19900833  T
Q  337 aagttttattcagcttttagcat 359  Q
    |||| ||||||||||||||||||    
T  19900834 aagtcttattcagcttttagcat 19900856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 346
Target Start/End: Original strand, 22526520 - 22526629
Alignment:
Q  237 tgcaacagaacaaagtttacctcttttgattgcagaatgttagcagtggttaaaatttttcgggtcctctctatttatttgttggaattccttaacaatc 336  Q
    ||||||| |||||||||||||| ||||||||||| ||||||||| | |||||  ||| || |  ||||||||||||| ||||||||||| | ||||||||    
T  22526520 tgcaacaaaacaaagtttacctgttttgattgcataatgttagcggcggttatgattctttgaatcctctctatttaattgttggaattacgtaacaatc 22526619  T
Q  337 aagttttatt 346  Q
    |||| |||||    
T  22526620 aagtcttatt 22526629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 361
Target Start/End: Complemental strand, 40215208 - 40215150
Alignment:
Q  303 ctctctatttatttgttggaattccttaacaatcaagttttattcagcttttagcattt 361  Q
    |||||||||||||||||||||||  |||| | |||||| | ||||||||||||||||||    
T  40215208 ctctctatttatttgttggaattaattaatagtcaagtctcattcagcttttagcattt 40215150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 325
Target Start/End: Original strand, 23080496 - 23080572
Alignment:
Q  248 aaagtttacctcttttgattgcagaatgttagcagtggttaaaatttttcgggtcctctctatttatttgttggaatt 325  Q
    ||||||||||| ||||||||||||||||||||| | |||||| ||| || |  ||| | |||||||||||||||||||    
T  23080496 aaagtttacctattttgattgcagaatgttagcggcggttaagattctttgaatcc-ccctatttatttgttggaatt 23080572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 237 - 348
Target Start/End: Original strand, 5797666 - 5797777
Alignment:
Q  237 tgcaacagaacaaagtttacctcttttgattgcagaatgttagcagtggttaaaatttttcgggtcctctctatttatttgttggaattccttaacaatc 336  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||| |||||  ||| || |  ||| |||||| || ||||| ||||| ||||||| ||    
T  5797666 tgcaacagagcaaagtttacctgttttgattgcagaatgttagcagcggttaggattctttgaatcccctctatgtagttgttcgaattacttaacagtc 5797765  T
Q  337 aagttttattca 348  Q
    |||| |||||||    
T  5797766 aagtcttattca 5797777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 237 - 355
Target Start/End: Complemental strand, 21885099 - 21884981
Alignment:
Q  237 tgcaacagaacaaagtttacctcttttgattgcagaatgttagcagtggttaaaatttttcgggtcctctctatttatttgttggaattccttaacaatc 336  Q
    ||||||||| ||||||| |||  || ||||||||| |||||||| ||||||| |||| || |  ||| || ||| |||||||||||||| | ||||| ||    
T  21885099 tgcaacagagcaaagttgaccagttctgattgcagcatgttagcggtggttagaattctttgaatcccctatatatatttgttggaattacgtaacagtc 21885000  T
Q  337 aagttttattcagctttta 355  Q
    |||| ||||||| ||||||    
T  21884999 aagtcttattcaactttta 21884981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 354
Target Start/End: Complemental strand, 21912423 - 21912306
Alignment:
Q  237 tgcaacagaacaaagtttacctcttttgattgcagaatgttagcagtggttaaaatttttcgggtcctctctatttatttgttggaattccttaacaatc 336  Q
    ||||||||| |||||||||| | ||||||||||||||||||||| |   |||  ||| ||||  | | || ||||||||||||||||||   ||||| ||    
T  21912423 tgcaacagagcaaagtttacatgttttgattgcagaatgttagcggcatttaggattcttcgaataccctatatttatttgttggaattatgtaacagtc 21912324  T
Q  337 aagttttattcagctttt 354  Q
     ||| |||||||||||||    
T  21912323 gagtcttattcagctttt 21912306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 322
Target Start/End: Original strand, 9062982 - 9063044
Alignment:
Q  260 ttttgattgcagaatgttagcagtggttaaaatttttcgggtcctctctatttatttgttgga 322  Q
    ||||||||||||||||||||| | ||||| |||| || |  ||||||||||| ||||||||||    
T  9062982 ttttgattgcagaatgttagcggcggttagaattcttagaatcctctctattcatttgttgga 9063044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 325
Target Start/End: Original strand, 20174734 - 20174824
Alignment:
Q  235 tatgcaacagaacaaagtttacctcttttgattgcagaatgttagcagtggttaaaatttttcgggtcctctctatttatttgttggaatt 325  Q
    ||||||||||| |||  ||||||| ||||||||| ||||||||||  || ||||  ||| ||||  |||  ||||||||||||||||||||    
T  20174734 tatgcaacagaccaagatttacctgttttgattgtagaatgttagtggtcgttaggattcttcgaatcccttctatttatttgttggaatt 20174824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 322
Target Start/End: Original strand, 23587810 - 23587872
Alignment:
Q  260 ttttgattgcagaatgttagcagtggttaaaatttttcgggtcctctctatttatttgttgga 322  Q
    |||| |||||||||||||||| ||||||| |||| ||||   || ||||||||||||||||||    
T  23587810 tttttattgcagaatgttagcggtggttagaattcttcgaaacccctctatttatttgttgga 23587872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 279
Target Start/End: Complemental strand, 36117491 - 36117449
Alignment:
Q  237 tgcaacagaacaaagtttacctcttttgattgcagaatgttag 279  Q
    |||||||||||||||||||| | ||||| ||||||||||||||    
T  36117491 tgcaacagaacaaagtttacttattttgtttgcagaatgttag 36117449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 36117432 - 36117377
Alignment:
Q  305 ctctatttatttgttggaattccttaacaatcaagttttattcagcttttagcattt 361  Q
    ||||||||||||||| ||||| || |||| |||||| ||||||||||||||| ||||    
T  36117432 ctctatttatttgttagaattact-aacagtcaagtcttattcagcttttagtattt 36117377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 356
Target Start/End: Complemental strand, 24188175 - 24188056
Alignment:
Q  237 tgcaacagaacaaagtttacctcttttgattgcagaatgttagcagtggttaaaatttttcgggtcctctctatttatttgttggaattccttaacaatc 336  Q
    ||||||||| ||||||||| || ||||||||| | |||||||||  | ||||  |||||| |  ||| |||||||||||||||| |||  ||||||||||    
T  24188175 tgcaacagagcaaagtttatctgttttgattgaaaaatgttagcgatagttaggattttttgaatcccctctatttatttgttgaaatgacttaacaatc 24188076  T
Q  337 aagttttattcagcttttag 356  Q
    ||||  ||||| ||||||||    
T  24188075 aagtcatattcggcttttag 24188056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 348
Target Start/End: Complemental strand, 28585972 - 28585863
Alignment:
Q  239 caacagaacaaagtttacctcttttgattgcagaatgttagcagtggttaaaatttttcgggtcctctctatttatttgttggaattccttaacaatcaa 338  Q
    |||||||  |||||||| || ||||||||| ||||||||||| | |||||  ||| |||   ||| ||||||||| ||||||||||| | ||||  ||||    
T  28585972 caacagagaaaagtttatctgttttgattgtagaatgttagcggcggttaggattcttcaaatcccctctatttaattgttggaattacgtaaccgtcaa 28585873  T
Q  339 gttttattca 348  Q
    || |||||||    
T  28585872 gtcttattca 28585863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 322
Target Start/End: Complemental strand, 14183290 - 14183229
Alignment:
Q  261 tttgattgcagaatgttagcagtggttaaaatttttcgggtcctctctatttatttgttgga 322  Q
    |||||||||||||||||||| |||||||| |||||| || ||| ||||||||| ||||||||    
T  14183290 tttgattgcagaatgttagcggtggttaagattttttggatcccctctatttaattgttgga 14183229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 355
Target Start/End: Complemental strand, 23056104 - 23055988
Alignment:
Q  239 caacagaacaaagtttacctcttttgattgcagaatgttagcagtggttaaaatttttcgggtcctctctatttatttgttggaattccttaacaatcaa 338  Q
    ||||||| |||  ||||||| ||||||| | ||||||||||| | |||||  ||| ||||  |||  | | |||||||||||||||| ||||||| ||||    
T  23056104 caacagagcaagatttacctgttttgatggtagaatgttagcggcggttaggattcttcgaatcccttttttttatttgttggaattacttaacagtcaa 23056005  T
Q  339 gttttattcagctttta 355  Q
    || ||||||| ||||||    
T  23056004 gtcttattcaactttta 23055988  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 278
Target Start/End: Complemental strand, 8557062 - 8557032
Alignment:
Q  248 aaagtttacctcttttgattgcagaatgtta 278  Q
    |||||||||||||||||||||||||||||||    
T  8557062 aaagtttacctcttttgattgcagaatgtta 8557032  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 357
Target Start/End: Complemental strand, 21074403 - 21074349
Alignment:
Q  303 ctctctatttatttgttggaattccttaacaatcaagttttattcagcttttagc 357  Q
    ||||||||| ||||||||||||| ||||||| |||| | ||||||| ||||||||    
T  21074403 ctctctattcatttgttggaattacttaacagtcaaatcttattcaacttttagc 21074349  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 340
Target Start/End: Original strand, 17965199 - 17965302
Alignment:
Q  237 tgcaacagaacaaagtttacctcttttgattgcagaatgttagcagtggttaaaatttttcgggtcctctctatttatttgttggaattccttaacaatc 336  Q
    ||||| ||| ||||||||| || ||||||||||||||||||||  | |||| | ||| |||   |||||||||| ||||||||||||||  |||||| ||    
T  17965199 tgcaatagagcaaagtttatctgttttgattgcagaatgttaggggcggttgagattcttcaaatcctctctatctatttgttggaattaattaacagtc 17965298  T
Q  337 aagt 340  Q
    ||||    
T  17965299 aagt 17965302  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 325
Target Start/End: Original strand, 26008222 - 26008297
Alignment:
Q  250 agtttacctcttttgattgcagaatgttagcagtggttaaaatttttcgggtcctctctatttatttgttggaatt 325  Q
    ||||||||| ||||||||| |||||||||||| ||||||| |||||| |  ||| ||||||| |||||||| ||||    
T  26008222 agtttacctgttttgattgtagaatgttagcaatggttaagattttttgaatcccctctattcatttgttgaaatt 26008297  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 340
Target Start/End: Complemental strand, 45621813 - 45621722
Alignment:
Q  249 aagtttacctcttttgattgcagaatgttagcagtggttaaaatttttcgggtcctctctatttatttgttggaattccttaacaatcaagt 340  Q
    |||||||| | ||||||||||||||||||||| | |||||| ||| || |  ||| ||||||| |||||||||||||  |||||| ||||||    
T  45621813 aagtttacttgttttgattgcagaatgttagcggcggttaagattctttgaatcccctctattcatttgttggaattaattaacagtcaagt 45621722  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 288
Target Start/End: Original strand, 19287498 - 19287535
Alignment:
Q  251 gtttacctcttttgattgcagaatgttagcagtggtta 288  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  19287498 gtttacctgttttcattgcagaatgttagcagtggtta 19287535  T

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Target: scaffold0136 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 280
Target Start/End: Complemental strand, 15409 - 15366
Alignment:
Q  237 tgcaacagaacaaagtttacctcttttgattgcagaatgttagc 280  Q
    ||||||||| | |||||||||| |||||||||||||||||||||    
T  15409 tgcaacagagcgaagtttacctgttttgattgcagaatgttagc 15366  T

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Target: scaffold0019 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 280
Target Start/End: Original strand, 11379 - 11422
Alignment:
Q  237 tgcaacagaacaaagtttacctcttttgattgcagaatgttagc 280  Q
    ||||||| | |||||||||||| |||||||||||||||||||||    
T  11379 tgcaacaaagcaaagtttacctgttttgattgcagaatgttagc 11422  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 348
Target Start/End: Original strand, 26810093 - 26810140
Alignment:
Q  301 tcctctctatttatttgttggaattccttaacaatcaagttttattca 348  Q
    ||||||||||||| ||| ||||||| |||||||||||||| |||||||    
T  26810093 tcctctctatttagttgctggaattacttaacaatcaagtcttattca 26810140  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 348
Target Start/End: Complemental strand, 6501486 - 6501385
Alignment:
Q  247 caaagtttacctcttttgattgcagaatgttagcagtggttaaaatttttcgggtcctctctatttatttgttggaattccttaacaatcaagttttatt 346  Q
    ||||||||| || |||| |||||||||||||||| | |||||  ||| ||||  ||| ||||||||| |||||||  || ||||||| |||| | |||||    
T  6501486 caaagtttagctgttttaattgcagaatgttagcggcggttatgattcttcgaatcccctctatttagttgttgggtttacttaacagtcaattcttatt 6501387  T
Q  347 ca 348  Q
    ||    
T  6501386 ca 6501385  T

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