View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20148_low_24 (Length: 387)
Name: NF20148_low_24
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20148_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 15 - 379
Target Start/End: Original strand, 37065690 - 37066051
Alignment:
| Q |
15 |
acaaccacccaaatttgaacacgtcctaaactcccctttgaagtaacactcactcccctctaaagggaaaatagcttcaactaattaagtaaaccaacca |
114 |
Q |
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| T |
37065690 |
acaaccacccaaatttgaacacgtcctaaactcccctttgaagtaacactcactcccctctaaagggaaaatagcttcaactaattaagtaaaccaacca |
37065789 |
T |
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| Q |
115 |
ataaaattaatccttttaaaactcatattcaaagtgtgcctattttttcaactattatataaaggccgcaatatcaaactatagccttaaacacaaaata |
214 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37065790 |
ataaaattaatc---taaaaactcatattcaaagtgtgcctattttttcaactattatataaaggccgcaatatcaaaccatagccttaaacacaaaata |
37065886 |
T |
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| Q |
215 |
tggagatggagtggactagaggcaacatcatcggacatggctcatccgccaccgtctacctcgccacctctcgtcgctccaccgatgtctccgcggttaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37065887 |
tggagatggagtggactagaggcaacatcatcggacatggctcatccgccaccgtctacctcgccacctctcgtcgctccaccgatgtctccgcggttaa |
37065986 |
T |
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| Q |
315 |
atcaacggagacatcactaccaaactcaaaccaactccagagagaacaaagaattctttcttctc |
379 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37065987 |
atcagcggagacatcactaccaaactcaaaccaactccagagtgaacaaagaattctttcttctc |
37066051 |
T |
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