View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20148_low_26 (Length: 376)
Name: NF20148_low_26
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20148_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 34875287 - 34875651
Alignment:
| Q |
1 |
agcaaaaagttacctgacataacaagctgaatctaagttgattatctttataatcagttccagttttaggaccatagagttttgactcggtcttccccca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34875287 |
agcaaaaagttacctgacataacaagctgaatctaagttgattatctttataatcagttccagttttaggaccatagagttttgactcggtcttccccca |
34875386 |
T |
|
| Q |
101 |
cacctttcatattccaaatgccaaaaataaagtcagtttaactcta--acacattcaaattcaatcctataaaggactataaacattccactgattgatg |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34875387 |
cacctttcatattccaaatgccaaaaataaagtcagtttaactctataacacattcaaattcaatcctataaaggactataaacattccactgattgatg |
34875486 |
T |
|
| Q |
199 |
aaaactaaatcatagaaatacaaccttttcaaggaaaagtgggtgatccacaaaaacacgatcaactcctctcatataacagtgaaagaatcgcacagtt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34875487 |
aaaactaaatcatagaaatacaaccttttcaaggaaaagtgggtgatccacaaaaacacgatcaactcctctcttataacagtgaaagaatcgcacagtt |
34875586 |
T |
|
| Q |
299 |
tcaattctatcaccaactttgagctacaacaaacaacaacaaaatgaaatatgtaaataaatcat |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34875587 |
tcaattctatcaccaactttgagctacaacaaacaacaacaaaatgaaatatgtaaataaatcat |
34875651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 179 - 340
Target Start/End: Complemental strand, 25077317 - 25077156
Alignment:
| Q |
179 |
aaacattccactgattgatgaaaactaaatcatagaaatacaa-ccttttcaaggaaaagtgggtgatccacaaaaacacgatcaactcctctcatataa |
277 |
Q |
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|||||||||| |||||||||||||| |||||| | ||| |||| || ||||||||||||||||| ||| |||||||||||||| ||||||||| | |
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| T |
25077317 |
aaacattccattgattgatgaaaacaaaatcacacaaagacaaaccacttcaaggaaaagtgggttatcaacaaaaacacgatcgactcctctcttgctg |
25077218 |
T |
|
| Q |
278 |
cagtgaaagaatcgcacagtttcaattctatcaccaactttgagctacaacaaacaacaacaa |
340 |
Q |
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||||||||||| | |||||||||||| || | |||||||||| |||| | ||||||||||| |
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| T |
25077217 |
cagtgaaagaaac-aacagtttcaattttaactccaactttgatctaccaacaacaacaacaa |
25077156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 179 - 340
Target Start/End: Complemental strand, 25135286 - 25135125
Alignment:
| Q |
179 |
aaacattccactgattgatgaaaactaaatcatagaaatacaa-ccttttcaaggaaaagtgggtgatccacaaaaacacgatcaactcctctcatataa |
277 |
Q |
| |
|
|||||||||| |||||||||||||| |||||| | ||| |||| || ||||||||||||||||| ||| |||||||||||||| ||||||||| | |
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| T |
25135286 |
aaacattccattgattgatgaaaacaaaatcacacaaagacaaaccacttcaaggaaaagtgggttatcaacaaaaacacgatcgactcctctcttgctg |
25135187 |
T |
|
| Q |
278 |
cagtgaaagaatcgcacagtttcaattctatcaccaactttgagctacaacaaacaacaacaa |
340 |
Q |
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||||||||||| | |||||||||||| || | |||||||||| |||| | ||||||||||| |
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|
| T |
25135186 |
cagtgaaagaaac-aacagtttcaattttaactccaactttgatctaccaacaacaacaacaa |
25135125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 25077422 - 25077358
Alignment:
| Q |
78 |
agttttgactcggtcttcccccacacctttcatattccaaatgcc-aaaaataaagtcagtttaa |
141 |
Q |
| |
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|||||||||| || |||||||||||| | ||| |||||||| ||| ||||||||||||||||||| |
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| T |
25077422 |
agttttgactaggccttcccccacacttgtcagattccaaaagccaaaaaataaagtcagtttaa |
25077358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 25135391 - 25135327
Alignment:
| Q |
78 |
agttttgactcggtcttcccccacacctttcatattccaaatgcc-aaaaataaagtcagtttaa |
141 |
Q |
| |
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|||||||||| || |||||||||||| | ||| |||||||| ||| ||||||||||||||||||| |
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| T |
25135391 |
agttttgactaggccttcccccacacttgtcagattccaaaagccaaaaaataaagtcagtttaa |
25135327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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