View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20148_low_27 (Length: 374)
Name: NF20148_low_27
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20148_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 16 - 364
Target Start/End: Original strand, 39440992 - 39441341
Alignment:
| Q |
16 |
catgtggaagactacccaatctgaagcttgggttgagtcaagggtggaaaattcatgaaatttctaagtggcaaatcttggtgccatattctttctttct |
115 |
Q |
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| T |
39440992 |
catgtggaagactacccaatctgaagcttgggttgagtcaagggtggaaaattcatgaaatttctaagtggcaaatcttggtgccatattctttctttct |
39441091 |
T |
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| Q |
116 |
gtgtacattgaattgttgataactaannnnnnnnctctctgagttcataatgtttgctgtggatataggttaggagaaattactagtaacaattggttag |
215 |
Q |
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| T |
39441092 |
gtgtacattgaattgttgataactaattttttttctccctgagttcataatgtttgctgtggatataggttaggagaaattactagtaacaattggttag |
39441191 |
T |
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| Q |
216 |
gacagtatcaattggttctttacgcattggcttctgagtcaagttttgtaaatttcagcttcaaaattcattctaaaaactcatgttgtgtggctgacac |
315 |
Q |
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| T |
39441192 |
gacagtatcaattggttctttacgcattggcttctgagtcaagttttgtaaatttcagcttcaaaattcattctaaaaactcatgttgtgtggctgacac |
39441291 |
T |
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| Q |
316 |
ctattgccaataatatgagccccgtttacact-attttcaatcctctctg |
364 |
Q |
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| T |
39441292 |
ctattgccaataatatgagccccgtttacactaattttcaatcctctctg |
39441341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 5964680 - 5964601
Alignment:
| Q |
56 |
agggtggaaaattcatgaaatttctaagtggcaaatcttggtgccatattctttctttctgtgtacattgaattgttgat |
135 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
5964680 |
agggaggaaaattcatgaaatttctaagtggcaaatattggtgtcatattctttctttttgtgtacattgaattgttgat |
5964601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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