View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20148_low_3 (Length: 647)
Name: NF20148_low_3
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20148_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 14 - 628
Target Start/End: Complemental strand, 54348193 - 54347578
Alignment:
| Q |
14 |
gaagatggagccggcaaggacgatggtgtaacggcgaccaatccagtcagaggttcggccagcgaggcaggaacctattaaggagaaaaggttgatgatg |
113 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54348193 |
gaagatggagccagcaaggacgatggtgtaacggcgaccaatccagtcagaggttcggccggcgaggcaggaacctattaaggagaaaaggttgatgatg |
54348094 |
T |
|
| Q |
114 |
cctactaggatttcaatttggacattagatagtttgaggtctctttttatgtatatcactgctccactcatcaccccaatatctgcataacataaaataa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54348093 |
cctactaggatttcaatttggacattagatagtttgaggtctctttttatgtatatcactgctccactcatcaccccaatatctgcataacataaaataa |
54347994 |
T |
|
| Q |
214 |
catacatatagttagttaatgtccatacatttccatgcatgtttactatctagctatgtatcaatatgtatggaggtaaatatatacattata----tag |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
54347993 |
catacatatagttagttaatgtccatacatttccatgcatgtttactatctagctatgtatcaatatgtatggaggtaaatatatacattatatatgtag |
54347894 |
T |
|
| Q |
310 |
tcactacttaccataaccaagtaaaatggaagtcatggaagccaatatagcacaggcgaaagcaaacttgttcgattcgggtttcttttgagaatcaaaa |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54347893 |
tcactacttaccataaccaagtaaaatggaagtcatggaagccaatatagcacaggcgaaagcaaacttgttcgattcgggtttcttttgagaatcaaaa |
54347794 |
T |
|
| Q |
410 |
tcctcaagagacttcagctgaactggtgttttctcctcagccataattcttaagtag---tataacacaatcagattgaattaatatagcaatggaagta |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54347793 |
tcctcaagagacttcagctgaactggtgttttctcctcagccataattcttaagtagttatataacacaatcagattgaattaatatagcaatggaa--- |
54347697 |
T |
|
| Q |
507 |
cgtacgtactgcacaaagagactgatcaattaatagaaaacactctatcagagaaatagaaaaatgttgagtttgataatgatatatagctagatacgtg |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
54347696 |
-gtacgtactgcacaaagagactgatcaattaatagaaaaca--ctatcagagaaatagaaaaatgttgagtttgatattgatatatagctagatacgtg |
54347600 |
T |
|
| Q |
607 |
catgcatgaataatgagaatta |
628 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
54347599 |
catgcatgaataatgagaatta |
54347578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 317 - 381
Target Start/End: Complemental strand, 26152478 - 26152414
Alignment:
| Q |
317 |
ttaccataaccaagtaaaatggaagtcatggaagccaatatagcacaggcgaaagcaaacttgtt |
381 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||| |||||||| || |||||| ||||||| |
|
|
| T |
26152478 |
ttaccatatccaagcaaaatggaagtcatggaagccaacatagcacaagcaaaagcatacttgtt |
26152414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 317 - 378
Target Start/End: Complemental strand, 26152338 - 26152277
Alignment:
| Q |
317 |
ttaccataaccaagtaaaatggaagtcatggaagccaatatagcacaggcgaaagcaaactt |
378 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||| |||||||| || |||||| |||| |
|
|
| T |
26152338 |
ttaccatatccaagcaaaatggaagtcatggaagccaacatagcacaagcaaaagcatactt |
26152277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 314 - 426
Target Start/End: Complemental strand, 27318460 - 27318348
Alignment:
| Q |
314 |
tacttaccataaccaagtaaaatggaagtcatggaagccaatatagcacaggcgaaagcaaacttgttcgattcgggtttcttttgagaatcaaaatcct |
413 |
Q |
| |
|
||||||||||| ||||||| || |||||||| |||||||| |||||||| || |||||||||||||| || | | || ||||||| | ||||||| | |
|
|
| T |
27318460 |
tacttaccatatccaagtaggatagaagtcatagaagccaagatagcacaagcacaagcaaacttgttccttttgagctttttttgaggaccaaaatctt |
27318361 |
T |
|
| Q |
414 |
caagagacttcag |
426 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
27318360 |
caagagatttcag |
27318348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 26152768 - 26152712
Alignment:
| Q |
141 |
gatagtttgaggtctctttttatgtatatcactgctccactcatcaccccaatatct |
197 |
Q |
| |
|
|||| ||| ||||||||||||||||| || ||||||||||||| || ||||||||| |
|
|
| T |
26152768 |
gatactttaaggtctctttttatgtagattgctgctccactcataacaccaatatct |
26152712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 27318815 - 27318767
Alignment:
| Q |
150 |
aggtctctttttatgtatatcactgctccactcatcaccccaatatctg |
198 |
Q |
| |
|
|||||||||||||| || || |||||||||||||||| |||||||||| |
|
|
| T |
27318815 |
aggtctctttttatatagatggctgctccactcatcacaccaatatctg |
27318767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University