View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20148_low_35 (Length: 333)

Name: NF20148_low_35
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20148_low_35
NF20148_low_35
[»] chr5 (6 HSPs)
chr5 (72-256)||(40510529-40510709)
chr5 (93-219)||(40519536-40519662)
chr5 (1-71)||(40510855-40510925)
chr5 (254-315)||(40508474-40508533)
chr5 (105-221)||(41781994-41782110)
chr5 (1-45)||(40519875-40519919)
[»] chr2 (1 HSPs)
chr2 (105-214)||(18163577-18163686)


Alignment Details
Target: chr5 (Bit Score: 156; Significance: 7e-83; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 72 - 256
Target Start/End: Complemental strand, 40510709 - 40510529
Alignment:
Q  72 tcaatacatagtattcactcctcacaatgttaattaatttgttaaattacataaaagtgtgaatgtgacataccaaaattgtcgatgagaccatggggaa 171  Q
    ||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  40510709 tcaatacatagtattcactcctcacaatgttaatg----tgttaaattacataaaagtgtgaatgtgacgtaccaaaattgtcgatgagaccatgggaaa 40510614  T
Q  172 taattgtcacattaaattgttgatgtgaccatcgggtagataagtgtattggatattggatgtcatgtcaaataggcaaaactaa 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40510613 taattgtcacattaaattgttgatgtgaccatcgggtagataagtgtattggatattggatgtcatgtcaaataggcaaaactaa 40510529  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 93 - 219
Target Start/End: Complemental strand, 40519662 - 40519536
Alignment:
Q  93 tcacaatgttaattaatttgttaaattacataaaagtgtgaatgtgacataccaaaattgtcgatgagaccatggggaataattgtcacattaaattgtt 192  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||    || ||||  |||||||||||| ||||||||||||||||||||||||    
T  40519662 tcacaatgttaattaatatgttaatttacataaaagtgtgaatgtgacatgttgaagttgttcatgagaccatggagaataattgtcacattaaattgtt 40519563  T
Q  193 gatgtgaccatcgggtagataagtgta 219  Q
    |||||||||||| |||| |||| ||||    
T  40519562 gatgtgaccatctggtatataaatgta 40519536  T

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Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 40510925 - 40510855
Alignment:
Q  1 attatacaatgagtcatgctgctcaatttgcttacaggtgagaaaacaaaagagattagagtcatatgaaa 71  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40510925 attatacaatgagtcatgctgctcaatttgcttacaggtcagaaaacaaaagagattagagtcatatgaaa 40510855  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 254 - 315
Target Start/End: Complemental strand, 40508533 - 40508474
Alignment:
Q  254 taaattttcttttataggaacataaatttatcttatatacaattaaattaactctattatct 315  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  40508533 taaattttcttttataggaacataaatttatct--tatacaattaaattaactctattatct 40508474  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 41781994 - 41782110
Alignment:
Q  105 ttaatttgttaaattacataaaagtgtgaatgtgacataccaaaattgtcgatgagaccatggggaataattgtcacattaaattgttgatgtgaccatc 204  Q
    ||||| |||||| |||||||||||||||||||||||||    || || |  ||||||||||||| |||||||||||||||||| ||||||| || ||||     
T  41781994 ttaatatgttaatttacataaaagtgtgaatgtgacatgttgaagttcttcatgagaccatgggaaataattgtcacattaaactgttgatatggccatt 41782093  T
Q  205 gggtagataagtgtatt 221  Q
     |||| |||| ||||||    
T  41782094 tggtatataaatgtatt 41782110  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 40519919 - 40519875
Alignment:
Q  1 attatacaatgagtcatgctgctcaatttgcttacaggtgagaaa 45  Q
    |||||||||||| ||||| |||||||||||| | |||||||||||    
T  40519919 attatacaatgaatcatgttgctcaatttgcatccaggtgagaaa 40519875  T

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Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 105 - 214
Target Start/End: Complemental strand, 18163686 - 18163577
Alignment:
Q  105 ttaatttgttaaattacataaaagtgtgaatgtgacataccaaaattgtcgatgagaccatggggaataattgtcacattaaattgttgatgtgaccatc 204  Q
    ||||| |||||| |||||||||||||||||||||||||    || ||||  ||||||||||| ||||| ||||||||||||||||||||||||| |||||    
T  18163686 ttaatatgttaatttacataaaagtgtgaatgtgacatgttgaagttgttcatgagaccatgaggaatcattgtcacattaaattgttgatgtggccatc 18163587  T
Q  205 gggtagataa 214  Q
     |||| ||||    
T  18163586 tggtatataa 18163577  T

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