View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20148_low_37 (Length: 324)
Name: NF20148_low_37
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20148_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 20 - 307
Target Start/End: Original strand, 33860726 - 33861009
Alignment:
| Q |
20 |
tatgaaagagtctgccccatttatcaggtataaatactattgccactataatagttttttccttcattttaaatgcaccagcattgcatttctaataatc |
119 |
Q |
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| T |
33860726 |
tatgaaagagtctgccccatttatcaggtatgaatactattgccactataatagttttttccttcattttaaatgcaccagcattgcatttctaataatc |
33860825 |
T |
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| Q |
120 |
catccaaatgtgtataatgcagaaccaatgtgtgaacaatgaaaaaactcattactctggcactgtgaatggaacaattcatgttgttgtcggcggaggg |
219 |
Q |
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| T |
33860826 |
c----aaatgtgtataatgcagaaccaatgtgtgaacaatgaaaaaactcattactctggcactgtgaatggaacaattcatgttgttgtcggcggaggg |
33860921 |
T |
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| Q |
220 |
ggaagtcacttgtcggacttcacaacagcacctcctatttggagtattttcagggacagagactacggtttcgtcaaactgacagcat |
307 |
Q |
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| T |
33860922 |
ggaagtcacttgtcggacttcacaacagcacctcctatttggagtattttcagggacagagactacggtttcgtcaaactgacagcat |
33861009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 121 - 307
Target Start/End: Original strand, 33871160 - 33871346
Alignment:
| Q |
121 |
atccaaatgtgtataatgcagaaccaatgtgtgaacaatgaaaaaactcattactctggcactgtgaatggaacaattcatgttgttgtcggcggagggg |
220 |
Q |
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| T |
33871160 |
atccaaatgtgtataatgcagaaccaatgcgtgaataaagaaaaatctcattactctggcactgtgaatggaacaattcatgttgttgttggcggaggtg |
33871259 |
T |
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| Q |
221 |
gaagtcacttgtcggacttcacaacagcacctcctatttggagtattttcagggacagagactacggtttcgtcaaactgacagcat |
307 |
Q |
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| T |
33871260 |
gaagtcacttgtcagacttcacaacagcacctcctatttggagtattttcagggacagagactacggtttcgtcaaactgacagcat |
33871346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 20 - 307
Target Start/End: Original strand, 33875604 - 33875888
Alignment:
| Q |
20 |
tatgaaagagtctgccccatttatcaggtataaatactat-tgccac-tataatagttttttccttcattttaaatgcaccagcattgcatttctaataa |
117 |
Q |
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| T |
33875604 |
tatgaaagagtgtgccctatttatcaggtataaatattaaatacttcatattatagtatttttcttccttctaaatgcaccagcatcgg-tttctaa--- |
33875699 |
T |
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| Q |
118 |
tccatccaaatgtgtataatgcagaaccaatgtgtgaacaatgaaaaaactcattactctggcactgtgaatggaacaattcatgttgttgtcggcggag |
217 |
Q |
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| T |
33875700 |
-ccatctaaatgtgtacaatgcagaaccaatgcgtgaacaatgaaaaatctcattactctggcactgtgaatggaacaattcatgttgttgttggtggag |
33875798 |
T |
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| Q |
218 |
ggggaagtcacttgtcggacttcacaacagcacctcctatttggagtattttcagggacagagactacggtttcgtcaaactgacagcat |
307 |
Q |
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| T |
33875799 |
gtggaagtcacttgtcagacttcaccacagcacctcctatttggagtattttcagagacaaagactatggttttggcaaactgacagcat |
33875888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 33871016 - 33871054
Alignment:
| Q |
23 |
gaaagagtctgccccatttatcaggtataaatactattg |
61 |
Q |
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| T |
33871016 |
gaaagagtatgccccatttatcaggtataaatactattg |
33871054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 42785166 - 42785263
Alignment:
| Q |
136 |
atgcagaaccaatgtgtgaacaatgaaaaaactcattactctggcactgtgaatggaacaattcatgttgttgtcggcggagggggaagtcacttgtc |
233 |
Q |
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| T |
42785166 |
atgcagaatcaatgtgtgaataaagaaaagtcacattattccggcattgtgaatggaacaattcatgttgttgttggaggagcaggaagccacttgtc |
42785263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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