View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20148_low_41 (Length: 309)

Name: NF20148_low_41
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20148_low_41
NF20148_low_41
[»] chr1 (1 HSPs)
chr1 (17-309)||(48889646-48889938)


Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 309
Target Start/End: Original strand, 48889646 - 48889938
Alignment:
Q  17 agcttgctcttattggaattgaatctggggttgtcttacttaacggttcaaatattgtcaccactgtaaaccttggctttgttgtgacagcgtctactat 116  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48889646 agcttgctcttattggaattgaatccggggttgtcttacttaacggttcaaatattgtcaccactgtaaaccttggctttgttgtgacagcgtctactat 48889745  T
Q  117 ttcacctgatggcagtgaagcaattgtaggtgggcaagatggtaagctgcatatttattctatctcaggagatacacttacagaacagattgttcttgag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  48889746 ttcacctgatggcagtgaagcaattgtaggtgggcaagatggtaagctgcatatttattctatctcaggagatacacttacagaacaaattgttcttgag 48889845  T
Q  217 aagcaccgaggagcaatcagtgtaatcaaatattcaccgaatgtttccatgtttgcatcagctgatcttaaacgtgaaactgttgtgtgggac 309  Q
    ||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||| || |||||| ||||||||||||||    
T  48889846 aagcaccgaggagcaatcagtgtaatcaaatattctccagatgtttccatgtttgcatcagctgatctaaatcgtgaagctgttgtgtgggac 48889938  T

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