View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20148_low_42 (Length: 304)
Name: NF20148_low_42
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20148_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 50291796 - 50291900
Alignment:
| Q |
14 |
atattgacacaatgatcatagaataaaggctcgccaacatgtacagttcctcattattttattctaagatgatggatgctccttgagcttatttacatgc |
113 |
Q |
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| T |
50291796 |
atattgacacaatgatcatagaataaaggctcgccaacatgtacagttcctcattattttattctaagatgatggatgctccttgagcttatttacatgc |
50291895 |
T |
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| Q |
114 |
tgaca |
118 |
Q |
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||||| |
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| T |
50291896 |
tgaca |
50291900 |
T |
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Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 50292000 - 50292070
Alignment:
| Q |
218 |
gtcaatcaccagaaaccatattgaggcaataatctacaaagcaacattttttatgagaaaacagagaaacc |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50292000 |
gtcaatcaccagaaaccatattgaggcaataatctacaaagcaacattttttatgagaaaacagagaaacc |
50292070 |
T |
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