View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20148_low_45 (Length: 285)
Name: NF20148_low_45
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20148_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 6 - 270
Target Start/End: Original strand, 53228899 - 53229163
Alignment:
| Q |
6 |
agagagaagaaaagacacaattttttagctactatcccttctattccctccnnnnnnnnn-cattccattttattctttgaatttttgaacaagtttata |
104 |
Q |
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| T |
53228899 |
agagacaagaaaagacaca-ttttttagctactatcccttctattccctccttttttttttcattccattttattctttgaatttttgaacaagtttata |
53228997 |
T |
|
| Q |
105 |
attaaaaactaattaaagtccagttgtaactagtctaaaagaaagggacccattccaaaaagttcataacattaacaatatttggttttttctgtcctgt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53228998 |
attaaaaactaattaaagtccagttgtaactagtctaaaagaaagggacccattccaaaaagttcataacattaacaatatttggttttttctgtcctgt |
53229097 |
T |
|
| Q |
205 |
gtgtatcatgatcatccatctagctatacctttcctttttcactttagaattttgatgatccaact |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53229098 |
gtgtatcatgatcatccatctagctatacctttcctttttcactttagaattttgatgatccaact |
53229163 |
T |
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