View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20148_low_5 (Length: 550)
Name: NF20148_low_5
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20148_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 350 - 534
Target Start/End: Original strand, 42636027 - 42636210
Alignment:
| Q |
350 |
tgtgacttgtgattgtgaccatattgatttagcaacagtttacttctgtgagtgtgcatctaacaaatactccaactctttgttcattgtagagacctcc |
449 |
Q |
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| T |
42636027 |
tgtgacttgtgattgtgaccatattgatttagcaacagtttccttctgtgagtgtgcatctaacaaatactccaattctttgttcattgtagagacctcc |
42636126 |
T |
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| Q |
450 |
taagccaagaaatatatatggccactattaattctttgttagcttggctaatctagagaaattctttgttattaatttttagttc |
534 |
Q |
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| T |
42636127 |
taagccaagaaatttacatggccactattaatt-tttgttagcttggctaatctagagaaattctttgttattaatttttagttc |
42636210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 42635832 - 42635907
Alignment:
| Q |
128 |
ggatgcactgcttgtaagtgaatattcttcacaggcttttgttagtttgttgcatagcacgattttccatttttgt |
203 |
Q |
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| T |
42635832 |
ggatgcactgcttgtaagtgaatattcttcacaggcttttgttagtttgttgcatagcacgattttccatttttgt |
42635907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 42635705 - 42635774
Alignment:
| Q |
1 |
tgccaagagctgaaattactttagtttctctagcatttttgtcagtgagttatttcctattcctagcatg |
70 |
Q |
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| T |
42635705 |
tgccaagagctgaaattactttagtttctctagcatttttgtcagtgagttatttcctattcctagcatg |
42635774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 42635975 - 42636022
Alignment:
| Q |
271 |
ttcagagaatcttaagaaatgaaggtgtttgaggtgaaacatcactac |
318 |
Q |
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| T |
42635975 |
ttcagagaatcttaagaaatgaaggtgtttgaggtgaaacatcactac |
42636022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 44095853 - 44095799
Alignment:
| Q |
16 |
ttactttagtttctctagcatttttgtcagtgagttatttcctattcctagcatg |
70 |
Q |
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| T |
44095853 |
ttactttagtttctctagaatttttgtcagaaggttatttcctattcctagcatg |
44095799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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