View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20148_low_51 (Length: 254)
Name: NF20148_low_51
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20148_low_51 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 31262041 - 31262263
Alignment:
| Q |
17 |
cattagacaataatcttcgttccgaaatccttcgttatggccattttgttgaagctgcatataaatcctttgaatttgatccttcttcatcaaactatgc |
116 |
Q |
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| T |
31262041 |
cattagacaataatcttcgttccgaaatccttcgttatggccattttgttgaagctgcatataaatcctttgaattcgacccttcttcatcaaactatgc |
31262140 |
T |
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| Q |
117 |
cacaaacaagttccccaaaaccacactcttcaaaaaatgtggtttacccaaaaccggttacaaagtaacaaaacatttacatgcaacctcaggaattcaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31262141 |
cacaaacaagttccccaaaaccacactcttcaaaaaatgtggtttacccaaaaccggttacaaagtaacaaaacatttacatgctacctcaggaattcaa |
31262240 |
T |
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| Q |
217 |
ctacctagttggatagacaaagc |
239 |
Q |
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||||||||||||||||||||||| |
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| T |
31262241 |
ctacctagttggatagacaaagc |
31262263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 31304136 - 31304197
Alignment:
| Q |
40 |
gaaatccttcgttatggccattttgttgaagctgcatataaatcctttgaatttgatccttc |
101 |
Q |
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|||||||| || ||||||||||||||||||||| | |||||||| ||||| ||||||||||| |
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| T |
31304136 |
gaaatcctacgctatggccattttgttgaagctacgtataaatcatttgagtttgatccttc |
31304197 |
T |
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