View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20148_low_52 (Length: 250)

Name: NF20148_low_52
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20148_low_52
NF20148_low_52
[»] chr5 (5 HSPs)
chr5 (110-242)||(7302907-7303039)
chr5 (110-242)||(16445142-16445274)
chr5 (16-65)||(7303084-7303133)
chr5 (16-65)||(16445052-16445101)
chr5 (21-61)||(40288391-40288431)
[»] chr4 (2 HSPs)
chr4 (110-242)||(6123085-6123217)
chr4 (16-65)||(6123262-6123311)
[»] chr7 (1 HSPs)
chr7 (128-229)||(10369864-10369971)
[»] chr8 (1 HSPs)
chr8 (21-61)||(25997456-25997496)
[»] chr6 (2 HSPs)
chr6 (21-61)||(4201891-4201931)
chr6 (21-61)||(24741091-24741131)


Alignment Details
Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 110 - 242
Target Start/End: Complemental strand, 7303039 - 7302907
Alignment:
Q  110 ctcatttgaattaatttcaatgaaactaactaacttacctatatcatcagcttcacttccaaagatatcatgaatgttgttgtctaaaccatggccaccg 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7303039 ctcatttgaattaatttcaatgaaactaactaacttacctatatcatcagcttcacttccaaagatatcatgaatgttgttgtctaaaccatggccacca 7302940  T
Q  210 gtgacattttcaacatcatttccgcattcatct 242  Q
    |||||||||||||||||||||||||||||||||    
T  7302939 gtgacattttcaacatcatttccgcattcatct 7302907  T

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Target: chr5; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 110 - 242
Target Start/End: Original strand, 16445142 - 16445274
Alignment:
Q  110 ctcatttgaattaatttcaatgaaactaactaacttacctatatcatcagcttcacttccaaagatatcatgaatgttgttgtctaaaccatggccaccg 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  16445142 ctcatttgaattaatttcaatgaaactaactaacttacctatatcatcagcttcacttccaaagatatcatgaatgttgttgtctaaaccatggccacca 16445241  T
Q  210 gtgacattttcaacatcatttccgcattcatct 242  Q
    |||||||||||||||||||||||||||||||||    
T  16445242 gtgacattttcaacatcatttccgcattcatct 16445274  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 7303133 - 7303084
Alignment:
Q  16 tcatgcatgtcttcatctccaccatttatatcatcttgggtccctggaac 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7303133 tcatgcatgtcttcatctccaccatttatatcatcttgggtccctggaac 7303084  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 16445052 - 16445101
Alignment:
Q  16 tcatgcatgtcttcatctccaccatttatatcatcttgggtccctggaac 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16445052 tcatgcatgtcttcatctccaccatttatatcatcttgggtccctggaac 16445101  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 40288391 - 40288431
Alignment:
Q  21 catgtcttcatctccaccatttatatcatcttgggtccctg 61  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  40288391 catgtcttcatcttcaccatttgtatcatcttgggtccctg 40288431  T

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Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 110 - 242
Target Start/End: Complemental strand, 6123217 - 6123085
Alignment:
Q  110 ctcatttgaattaatttcaatgaaactaactaacttacctatatcatcagcttcacttccaaagatatcatgaatgttgttgtctaaaccatggccaccg 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6123217 ctcatttgaattaatttcaatgaaactaactaacttacctatatcatcagcttcacttccaaagatatcatgaatgttgttgtctaaaccatggccacca 6123118  T
Q  210 gtgacattttcaacatcatttccgcattcatct 242  Q
    |||||||||||||||||||||||||||||||||    
T  6123117 gtgacattttcaacatcatttccgcattcatct 6123085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 6123311 - 6123262
Alignment:
Q  16 tcatgcatgtcttcatctccaccatttatatcatcttgggtccctggaac 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6123311 tcatgcatgtcttcatctccaccatttatatcatcttgggtccctggaac 6123262  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 128 - 229
Target Start/End: Original strand, 10369864 - 10369971
Alignment:
Q  128 aatgaaactaactaacttacct------atatcatcagcttcacttccaaagatatcatgaatgttgttgtctaaaccatggccaccggtgacattttca 221  Q
    ||||||||||||||||||||||      ||||||||||||||| ||||||| | ||||||||||||| ||||||||||| ||||||| ||||||||||||    
T  10369864 aatgaaactaactaacttacctctaaatatatcatcagcttcatttccaaataaatcatgaatgttgatgtctaaaccacggccaccagtgacattttca 10369963  T
Q  222 acatcatt 229  Q
    ||||||||    
T  10369964 acatcatt 10369971  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 25997456 - 25997496
Alignment:
Q  21 catgtcttcatctccaccatttatatcatcttgggtccctg 61  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  25997456 catgtcttcatcttcaccatttgtatcatcttgggtccctg 25997496  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 4201931 - 4201891
Alignment:
Q  21 catgtcttcatctccaccatttatatcatcttgggtccctg 61  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  4201931 catgtcttcatcttcaccatttgtatcatcttgggtccctg 4201891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 24741131 - 24741091
Alignment:
Q  21 catgtcttcatctccaccatttatatcatcttgggtccctg 61  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  24741131 catgtcttcatcttcaccatttgtatcatcttgggtccctg 24741091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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