View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20148_low_55 (Length: 240)
Name: NF20148_low_55
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20148_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 10854291 - 10854473
Alignment:
| Q |
1 |
aataaactaatctaactacatacaatattccatattccagatttacaaacatattgataactatatctcatgaatctcttattttgtttcttcaattgcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
10854291 |
aataaactaatctaactacatacaatattccatattccatattcacaaacatattgataactatatctcatgaatctcttattttgtttctccgattgcc |
10854390 |
T |
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| Q |
101 |
tgtgtttatcgatcaattgagttgtgtcggatagaattggggcttatgaaataataacattatcggtgagttgatttgttaaa |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10854391 |
tgtgtttatcgatcaattgagttgtgtcggatagaattggggcttatgaaataataacattatcggtgacttgatttgttaaa |
10854473 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 223
Target Start/End: Original strand, 10854504 - 10854533
Alignment:
| Q |
194 |
aaaatcctccttgattcactaccttcttcc |
223 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
10854504 |
aaaatcctccttgattcactaccttcttcc |
10854533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 9269730 - 9269548
Alignment:
| Q |
1 |
aataaactaatctaactacatacaatattccatattccagatttacaaacatattgataactatatctcatgaatctcttattttgtttcttcaattgcc |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
9269730 |
aataaactaatctaactacatacaatattccatattccagatttacaaacatattgataactatatctcatgaatctcttattttgtttctccgattgcc |
9269631 |
T |
|
| Q |
101 |
tgtgtttatcgatcaattgagttgtgtcggatagaattggggcttatgaaataataacattatcggtgagttgatttgttaaa |
183 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
9269630 |
tgtgtttatcgatcaattgagttgtgtcggatagaattggagcttatgaaataataacatattcggtgacttgatttgttaaa |
9269548 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 9269516 - 9269488
Alignment:
| Q |
195 |
aaatcctccttgattcactaccttcttcc |
223 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
9269516 |
aaatcctccttgattcactaccttcttcc |
9269488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 23733639 - 23733683
Alignment:
| Q |
29 |
tccatattccagatttacaaacatattgataactatatctcatga |
73 |
Q |
| |
|
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|
| T |
23733639 |
tccatattccaaatttacaaacttattgataactatatcacatga |
23733683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 23740831 - 23740875
Alignment:
| Q |
29 |
tccatattccagatttacaaacatattgataactatatctcatga |
73 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||| ||||| |
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|
| T |
23740831 |
tccatattccaaatttacaaacttattgataactatatcacatga |
23740875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 23616982 - 23617025
Alignment:
| Q |
29 |
tccatattccagatttacaaacatattgataactatatctcatg |
72 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||| |||| |
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|
| T |
23616982 |
tccatattccaaatttacaaacttattgataactatatcacatg |
23617025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 23648323 - 23648366
Alignment:
| Q |
29 |
tccatattccagatttacaaacatattgataactatatctcatg |
72 |
Q |
| |
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||||||||||| |||||||||| |||||||||||||||| |||| |
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|
| T |
23648323 |
tccatattccaaatttacaaacttattgataactatatcacatg |
23648366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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