View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20148_low_56 (Length: 235)
Name: NF20148_low_56
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20148_low_56 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 5112221 - 5112006
Alignment:
| Q |
5 |
ggtagattattctagataaattatatggattcaacttnnnnnnngactctatctattgatatcaaatactgagttagatgaagaaacatgtacctgaagc |
104 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5112221 |
ggtagatttttctagataaattatatggattcaacttaaaaaaagactctatctattgatatcaaatactaagttagatgaagaaacatgtacctgaagc |
5112122 |
T |
|
| Q |
105 |
ataaaccccatattaaccacaaaagcattaggaattggctcaacaggaatccatgccccatctttcaagacttgaagtgcagtgatatttggttcttgaa |
204 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5112121 |
ataagccccatattaacaacaaaagcattaggaattggctcaacaggaatccatgccccatctttcaagacttgaagtgcagtgatatttggttcttgaa |
5112022 |
T |
|
| Q |
205 |
aaagaatggttagaat |
220 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
5112021 |
aaagaatggttagaat |
5112006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 94 - 220
Target Start/End: Complemental strand, 5105908 - 5105782
Alignment:
| Q |
94 |
gtacctgaagcataaaccccatattaaccacaaaagcattaggaattggctcaacaggaatccatgccccatctttcaagacttgaagtgcagtgatatt |
193 |
Q |
| |
|
|||||| ||||||||||||||| ||||| ||||| ||||| ||||||||||||| |||||||||||| ||||| ||||| | ||||||||| ||||| | |
|
|
| T |
5105908 |
gtacctaaagcataaaccccatgttaactacaaaggcattcggaattggctcaataggaatccatgcaccatccttcaatatttgaagtgctgtgatctc |
5105809 |
T |
|
| Q |
194 |
tggttcttgaaaaagaatggttagaat |
220 |
Q |
| |
|
||||| ||| |||||||| |||||||| |
|
|
| T |
5105808 |
tggttgttggaaaagaattgttagaat |
5105782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 5117388 - 5117485
Alignment:
| Q |
117 |
ttaaccacaaaagcattaggaattggctcaacaggaatccatgccccatctttcaagacttgaagtgcagtgatatttggttcttgaaaaagaatggt |
214 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||| |||||||||| || |||||||| ||| | |||| ||||||||| |||||||| |
|
|
| T |
5117388 |
ttaaccacaaaagcatatggaattggctcaacaacaatccattccccatctttgaatacttgaagagcatttatatcattttcttgaaacagaatggt |
5117485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University