View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20148_low_6 (Length: 499)
Name: NF20148_low_6
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20148_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Original strand, 48889945 - 48890434
Alignment:
| Q |
1 |
tccagagaggtaacttgagcctgatatgactgttccatgaagttgaaatgtcttgtgcctgaatgctttgtttgtcttatatataccaaattttcctatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
48889945 |
tccagagaggtaacttgagcctgatatgactgttccatgaagttgatatgtcttgtgcctgaatgctttgtttgtcctatatataccaaattttcctatg |
48890044 |
T |
|
| Q |
101 |
tgaaatgagaaatacatgacttatactctcatgattgtaacattattgcttcaattatcatgatgtacacttgtttttgtcataacttactgaaaaatgc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48890045 |
tgaaatgagaaatacatgacttatactctcatgattgtaacattattgcttcaattatcatgatgtacacttgtttttgtcataacttactgaaaaatgt |
48890144 |
T |
|
| Q |
201 |
cgttgctaaataaatcttcctttctctttcaggtggtgcttaataacatgttgtttcacactgcacgtgtaaactgtcttgcttggtcacctaatagcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48890145 |
cgttgctaaataaatcttcctttctctttcaggtggtgcttaataacatgttgtttcacactgcacgtgtaaactgtcttgcttggtcacctaatagcaa |
48890244 |
T |
|
| Q |
301 |
actggtagctactggttcacttgatacatgtgttattgtatacgaaattggaaagccagcatcaagccgcagaaccataaaaggggctcatttaggtgga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48890245 |
actggtagctactggttcacttgatacatgtgttattgtatacgaaattggaaagccagcatcaagccgcagaaccataaaaggggctcatttaggtgga |
48890344 |
T |
|
| Q |
401 |
gtgtatggcttgacttttattgagccagaaagagtggtcagttcgggagaagatagttgcgttcgtgtttgggatttaatttcagaataa |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48890345 |
gtgtatggcttgacttttattgagccagaaagagtggtcagttcgggagaagatagttgcgttcgtgtttgggatttaatttcagaataa |
48890434 |
T |
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