View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20148_low_61 (Length: 222)

Name: NF20148_low_61
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20148_low_61
NF20148_low_61
[»] chr7 (25 HSPs)
chr7 (1-198)||(24952789-24952986)
chr7 (140-198)||(15716252-15716310)
chr7 (140-182)||(15954623-15954665)
chr7 (140-182)||(26605058-26605100)
chr7 (140-182)||(35291328-35291370)
chr7 (140-198)||(46575103-46575161)
chr7 (140-184)||(23406654-23406698)
chr7 (140-183)||(3214887-3214930)
chr7 (147-198)||(23110439-23110490)
chr7 (140-183)||(38665459-38665502)
chr7 (140-182)||(6791446-6791488)
chr7 (140-198)||(24812424-24812482)
chr7 (152-198)||(38666216-38666262)
chr7 (141-198)||(30076987-30077044)
chr7 (141-182)||(41968435-41968476)
chr7 (140-192)||(18520267-18520319)
chr7 (140-171)||(29606270-29606301)
chr7 (144-179)||(35358068-35358103)
chr7 (140-184)||(5215384-5215429)
chr7 (140-184)||(21919690-21919735)
chr7 (140-169)||(32529182-32529211)
chr7 (138-182)||(17306601-17306645)
chr7 (143-171)||(37504564-37504592)
chr7 (138-198)||(39558922-39558982)
chr7 (140-168)||(47642875-47642903)
[»] chr5 (25 HSPs)
chr5 (137-195)||(9604430-9604488)
chr5 (140-182)||(702312-702354)
chr5 (140-198)||(14434820-14434878)
chr5 (141-198)||(40803667-40803724)
chr5 (141-180)||(33210734-33210773)
chr5 (140-182)||(2852060-2852102)
chr5 (140-182)||(6260380-6260422)
chr5 (141-195)||(9910042-9910096)
chr5 (140-182)||(13127343-13127385)
chr5 (140-198)||(33678504-33678562)
chr5 (140-182)||(36427907-36427949)
chr5 (140-182)||(39816507-39816549)
chr5 (149-198)||(30753458-30753507)
chr5 (138-182)||(479674-479718)
chr5 (141-184)||(13119159-13119202)
chr5 (140-171)||(42597476-42597507)
chr5 (140-198)||(28318349-28318407)
chr5 (140-182)||(29960229-29960271)
chr5 (140-182)||(40563117-40563159)
chr5 (144-182)||(42486611-42486649)
chr5 (141-189)||(5140672-5140721)
chr5 (140-184)||(5512684-5512729)
chr5 (140-184)||(39939035-39939080)
chr5 (140-188)||(28332478-28332526)
chr5 (144-180)||(30753427-30753463)
[»] chr8 (15 HSPs)
chr8 (136-195)||(37675935-37675994)
chr8 (140-198)||(41720595-41720653)
chr8 (138-184)||(118170-118216)
chr8 (136-198)||(39646635-39646697)
chr8 (140-182)||(2749317-2749359)
chr8 (136-182)||(9497901-9497947)
chr8 (141-182)||(39300086-39300127)
chr8 (140-184)||(1043420-1043464)
chr8 (140-184)||(2261374-2261418)
chr8 (140-184)||(7128092-7128136)
chr8 (140-184)||(29454145-29454189)
chr8 (135-182)||(10706552-10706599)
chr8 (143-182)||(44000566-44000605)
chr8 (140-182)||(29265591-29265633)
chr8 (141-181)||(15231350-15231390)
[»] chr3 (39 HSPs)
chr3 (141-184)||(27045054-27045097)
chr3 (140-198)||(53289232-53289290)
chr3 (138-198)||(46507361-46507420)
chr3 (144-198)||(4817082-4817136)
chr3 (140-198)||(29388697-29388755)
chr3 (140-182)||(37520704-37520746)
chr3 (140-198)||(39987353-39987411)
chr3 (140-182)||(44653533-44653575)
chr3 (137-182)||(47746191-47746236)
chr3 (140-184)||(1129131-1129175)
chr3 (140-184)||(35501150-35501194)
chr3 (140-184)||(40478118-40478162)
chr3 (140-184)||(44379416-44379460)
chr3 (141-184)||(23456818-23456861)
chr3 (140-182)||(26884975-26885017)
chr3 (140-198)||(41982331-41982389)
chr3 (140-182)||(42621850-42621892)
chr3 (140-198)||(54428841-54428899)
chr3 (140-184)||(1021334-1021378)
chr3 (130-184)||(8966291-8966345)
chr3 (140-182)||(15997183-15997225)
chr3 (140-198)||(26850272-26850330)
chr3 (140-182)||(29806371-29806413)
chr3 (140-198)||(30349350-30349408)
chr3 (132-182)||(32636989-32637039)
chr3 (140-182)||(42479047-42479089)
chr3 (133-182)||(48795434-48795484)
chr3 (141-198)||(7352169-7352226)
chr3 (145-182)||(9507265-9507302)
chr3 (145-182)||(9515240-9515277)
chr3 (140-185)||(19547848-19547893)
chr3 (140-184)||(29698324-29698369)
chr3 (140-184)||(32121901-32121946)
chr3 (140-181)||(36220769-36220810)
chr3 (141-182)||(37127807-37127848)
chr3 (138-171)||(41217428-41217461)
chr3 (140-184)||(25834590-25834634)
chr3 (140-184)||(40474195-40474239)
chr3 (140-184)||(51344732-51344776)
[»] chr2 (18 HSPs)
chr2 (140-195)||(9589463-9589518)
chr2 (140-198)||(7673297-7673355)
chr2 (140-198)||(25331457-25331515)
chr2 (140-198)||(32602305-32602363)
chr2 (140-195)||(21404200-21404255)
chr2 (140-198)||(40495793-40495851)
chr2 (141-198)||(17451285-17451342)
chr2 (138-182)||(45157876-45157920)
chr2 (136-182)||(6945704-6945750)
chr2 (140-198)||(9122158-9122216)
chr2 (140-182)||(32401081-32401123)
chr2 (144-182)||(1580253-1580291)
chr2 (141-171)||(36754339-36754369)
chr2 (140-198)||(43439997-43440055)
chr2 (140-184)||(8333893-8333938)
chr2 (140-184)||(41555433-41555478)
chr2 (190-222)||(10851904-10851936)
chr2 (140-184)||(35895313-35895357)
[»] chr6 (12 HSPs)
chr6 (140-198)||(23416843-23416901)
chr6 (140-184)||(4509789-4509833)
chr6 (147-198)||(33574242-33574293)
chr6 (140-182)||(8549565-8549607)
chr6 (137-171)||(9687149-9687183)
chr6 (140-182)||(33574715-33574757)
chr6 (140-182)||(33574893-33574935)
chr6 (140-184)||(11763175-11763219)
chr6 (140-184)||(23069060-23069104)
chr6 (135-198)||(18772206-18772269)
chr6 (140-182)||(14779265-14779307)
chr6 (140-184)||(10965983-10966028)
[»] chr4 (25 HSPs)
chr4 (140-198)||(1857150-1857208)
chr4 (140-198)||(29364528-29364586)
chr4 (140-198)||(27990538-27990596)
chr4 (147-198)||(24535491-24535542)
chr4 (138-181)||(24979942-24979985)
chr4 (140-198)||(126924-126982)
chr4 (140-182)||(26118115-26118157)
chr4 (140-198)||(28835790-28835848)
chr4 (140-182)||(42177344-42177386)
chr4 (141-198)||(8256788-8256845)
chr4 (141-198)||(8270206-8270263)
chr4 (140-181)||(29582329-29582370)
chr4 (140-181)||(36631038-36631079)
chr4 (141-198)||(50733204-50733261)
chr4 (139-171)||(50608058-50608090)
chr4 (138-198)||(56303184-56303244)
chr4 (140-198)||(4720817-4720875)
chr4 (140-182)||(23058767-23058809)
chr4 (140-182)||(30348165-30348207)
chr4 (144-182)||(34829085-34829123)
chr4 (140-182)||(43147859-43147901)
chr4 (140-184)||(19527083-19527128)
chr4 (140-184)||(39103539-39103584)
chr4 (141-182)||(52607571-52607612)
chr4 (140-184)||(33491164-33491208)
[»] chr1 (36 HSPs)
chr1 (140-198)||(2249589-2249647)
chr1 (144-198)||(6966255-6966309)
chr1 (140-182)||(12105162-12105204)
chr1 (140-198)||(13202938-13202996)
chr1 (140-198)||(31821573-31821631)
chr1 (140-198)||(45622482-45622540)
chr1 (140-198)||(46641863-46641921)
chr1 (140-198)||(47544643-47544701)
chr1 (139-184)||(34038162-34038207)
chr1 (141-198)||(38718078-38718135)
chr1 (131-198)||(44264003-44264070)
chr1 (141-184)||(48760424-48760467)
chr1 (140-198)||(24003421-24003479)
chr1 (140-182)||(52345601-52345643)
chr1 (140-181)||(10408658-10408699)
chr1 (141-198)||(52861300-52861357)
chr1 (140-184)||(38261163-38261207)
chr1 (140-180)||(46362025-46362065)
chr1 (142-182)||(47693561-47693601)
chr1 (136-184)||(52180593-52180641)
chr1 (144-198)||(8396695-8396749)
chr1 (140-198)||(10348029-10348087)
chr1 (140-182)||(25702437-25702479)
chr1 (137-171)||(30572674-30572708)
chr1 (140-181)||(35873938-35873979)
chr1 (140-184)||(40054947-40054992)
chr1 (140-184)||(43916348-43916393)
chr1 (131-180)||(46235196-46235245)
chr1 (140-184)||(50631595-50631640)
chr1 (133-181)||(2247408-2247456)
chr1 (140-184)||(6468793-6468837)
chr1 (140-184)||(9588004-9588048)
chr1 (140-184)||(24230571-24230615)
chr1 (138-182)||(24381682-24381726)
chr1 (140-184)||(31530309-31530353)
chr1 (140-184)||(48976877-48976921)
[»] scaffold0923 (1 HSPs)
scaffold0923 (140-184)||(45-89)
[»] scaffold1319 (1 HSPs)
scaffold1319 (140-198)||(45-103)
[»] scaffold0667 (1 HSPs)
scaffold0667 (140-181)||(196-237)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 24952789 - 24952986
Alignment:
Q  1 tcctttgatgtaaaattaaagaaaaaatgtcagatacttattagtaaatcaaggttatcgatgtgaataaaatattgtgtgcctttccattaagagaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24952789 tcctttgatgtaaaattaaagaaaaaatgtcagatacttattagtaaatcaaggttatcgatgtgaataaaatattgtgtgcctttccattaagagaata 24952888  T
Q  101 aatgtgatagatacttcgtaaataaatatattttcaagagaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| || |||||||||    
T  24952889 aatgtgatagatacttcgtaaacaaatatattttcaagagaacttctacggtacactcacaaaatgagatgtaccggtattcctacttcttaatttta 24952986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 15716310 - 15716252
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||    
T  15716310 gaacttctacggtacactcacaaaatgaggtgtaccggtactcctacttcttaatttta 15716252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 15954665 - 15954623
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  15954665 gaacttctacggtacactcacaaaatgaggtgtaccggtactc 15954623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 26605058 - 26605100
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  26605058 gaacttctacggtacactcacaaaatgaggtgtaccggtactc 26605100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 35291328 - 35291370
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  35291328 gaacttctacggtacactcacaaaatgaggtgtaccggtactc 35291370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 46575103 - 46575161
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||  || |||||||||    
T  46575103 gaacttctacggtacattcacaaaatgaggtgtaccggtactcctgcttcttaatttta 46575161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 23406654 - 23406698
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||    
T  23406654 gaacttatacggtacactcacaaaatgaggtgtaccggtactcct 23406698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 183
Target Start/End: Complemental strand, 3214930 - 3214887
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcc 183  Q
    |||||||||||||||||||||||| ||||||| |||||||||||    
T  3214930 gaacttctacggtacactcacaaagtgaggtgtaccggtactcc 3214887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 198
Target Start/End: Original strand, 23110439 - 23110490
Alignment:
Q  147 tacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||||||||||||| || || ||||||||| |||||||||||||    
T  23110439 tacggtacactcacaaaatgagatgtactggtactcctgttttttaatttta 23110490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 183
Target Start/End: Original strand, 38665459 - 38665502
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcc 183  Q
    |||||||||||||||||||||||||||| ||| |||||||||||    
T  38665459 gaacttctacggtacactcacaaaatgaagtgtaccggtactcc 38665502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 6791446 - 6791488
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||||| ||||||||||||| ||||||||||    
T  6791446 gaacttctacggtacacttacaaaatgaggtgtaccggtactc 6791488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 24812482 - 24812424
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    ||||||||||| |||||| ||||||| ||||| | |||||||||| |||||||||||||    
T  24812482 gaacttctacgatacactaacaaaataaggtgtatcggtactcctgttttttaatttta 24812424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 38666262 - 38666216
Alignment:
Q  152 tacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||| ||||||||||||| |||||||||||| |||||||||||||    
T  38666262 tacacttacaaaatgaggtgtaccggtactcctgttttttaatttta 38666216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 30077044 - 30076987
Alignment:
Q  141 aacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    ||||| |||||||||||||||||||||||||  |||||||||||  || |||||||||    
T  30077044 aacttttacggtacactcacaaaatgaggtgtgccggtactcctccttcttaatttta 30076987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 41968435 - 41968476
Alignment:
Q  141 aacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    ||||||||||||||||||||||||||||||| | ||||||||    
T  41968435 aacttctacggtacactcacaaaatgaggtgtatcggtactc 41968476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 18520319 - 18520267
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctatttttta 192  Q
    |||||| || ||||||||||||||||||| || ||||||||||||| ||||||    
T  18520319 gaacttttatggtacactcacaaaatgagatgtaccggtactcctacttttta 18520267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 171
Target Start/End: Original strand, 29606270 - 29606301
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtg 171  Q
    ||||||||||||||||||||||||||||||||    
T  29606270 gaacttctacggtacactcacaaaatgaggtg 29606301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 179
Target Start/End: Complemental strand, 35358103 - 35358068
Alignment:
Q  144 ttctacggtacactcacaaaatgaggtgcaccggta 179  Q
    |||||||||||||||||||||||||||| |||||||    
T  35358103 ttctacggtacactcacaaaatgaggtgtaccggta 35358068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 5215429 - 5215384
Alignment:
Q  140 gaacttctacggtacac-tcacaaaatgaggtgcaccggtactcct 184  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  5215429 gaacttctacggtacacatcacaaattgaggtgtaccggtactcct 5215384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 21919690 - 21919735
Alignment:
Q  140 gaacttctacggtacac-tcacaaaatgaggtgcaccggtactcct 184  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  21919690 gaacttctacggtacacctcacaaattgaggtgtaccggtactcct 21919735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 169
Target Start/End: Original strand, 32529182 - 32529211
Alignment:
Q  140 gaacttctacggtacactcacaaaatgagg 169  Q
    ||||||||||||||||||||||||||||||    
T  32529182 gaacttctacggtacactcacaaaatgagg 32529211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 17306601 - 17306645
Alignment:
Q  138 gagaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    ||||||||||| |||||||||||||| |||| || ||||||||||    
T  17306601 gagaacttctatggtacactcacaaagtgagatgtaccggtactc 17306645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 171
Target Start/End: Original strand, 37504564 - 37504592
Alignment:
Q  143 cttctacggtacactcacaaaatgaggtg 171  Q
    |||||||||||||||||||||||||||||    
T  37504564 cttctacggtacactcacaaaatgaggtg 37504592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 39558982 - 39558922
Alignment:
Q  138 gagaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||| ||||||| | ||||||||||| |||||| || ||| || |||||||||    
T  39558982 gagaacttctacagtacacttataaaatgaggtgtaccggtccttctacttcttaatttta 39558922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 168
Target Start/End: Complemental strand, 47642903 - 47642875
Alignment:
Q  140 gaacttctacggtacactcacaaaatgag 168  Q
    |||||||||||||||||||||||||||||    
T  47642903 gaacttctacggtacactcacaaaatgag 47642875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 9604430 - 9604488
Alignment:
Q  137 agagaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatt 195  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||    
T  9604430 agagaacttctacggtacactcacaaaatgaggtgtaccggtactcctacttcttaatt 9604488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 702354 - 702312
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  702354 gaacttctacggtacactcacaaaatgaggtgtaccggtactc 702312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 14434820 - 14434878
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||| ||||||||||||||||||||| | |||||||||| ||| |||||||||    
T  14434820 gaacttctactgtacactcacaaaatgaggtgtatcggtactcctgtttcttaatttta 14434878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 40803724 - 40803667
Alignment:
Q  141 aacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||| |||||||||||||||||| ||||||||||||  || |||||||||    
T  40803724 aacttctacggtgcactcacaaaatgaggtgtaccggtactcctgcttcttaatttta 40803667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 33210773 - 33210734
Alignment:
Q  141 aacttctacggtacactcacaaaatgaggtgcaccggtac 180  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  33210773 aacttctacggtacactcacaaaatgaggtgtaccggtac 33210734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 2852102 - 2852060
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||||||||||||||||||| | ||||||||    
T  2852102 gaacttctacggtacactcacaaaatgaggtgtatcggtactc 2852060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 6260422 - 6260380
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||||||| ||||||||||| ||||||||||    
T  6260422 gaacttctacggtacactcataaaatgaggtgtaccggtactc 6260380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 9910042 - 9910096
Alignment:
Q  141 aacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatt 195  Q
    |||||||| |||||||||||||||||||||| |||| |||||||  |||||||||    
T  9910042 aacttctatggtacactcacaaaatgaggtgtaccgatactccttctttttaatt 9910096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 13127385 - 13127343
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||| ||||||||||||||| ||||||||||    
T  13127385 gaacttctacggtacattcacaaaatgaggtgtaccggtactc 13127343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 33678562 - 33678504
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    ||||||||| |||||||||||||||||||||| | ||||||||||  || |||||||||    
T  33678562 gaacttctatggtacactcacaaaatgaggtgtatcggtactcctgcttcttaatttta 33678504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 36427907 - 36427949
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  36427907 gaacttctacggtacactcacaaagtgaggtgtaccggtactc 36427949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 39816507 - 39816549
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  39816507 gaacttctacggtacactcacaaagtgaggtgtaccggtactc 39816549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 30753458 - 30753507
Alignment:
Q  149 cggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    ||||||||||||||||||||||| |||||||||| || ||| ||||||||    
T  30753458 cggtacactcacaaaatgaggtgtaccggtactcttactttataatttta 30753507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 479674 - 479718
Alignment:
Q  138 gagaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||||||||||||| ||||||| || |||||||    
T  479674 gagaacttctacggtacactcacaaagtgaggtgtactggtactc 479718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 13119202 - 13119159
Alignment:
Q  141 aacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    ||||||||||||||||| ||||| ||||||| ||||||||||||    
T  13119202 aacttctacggtacacttacaaagtgaggtgtaccggtactcct 13119159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 171
Target Start/End: Original strand, 42597476 - 42597507
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtg 171  Q
    ||||||||||||||||||||||||||||||||    
T  42597476 gaacttctacggtacactcacaaaatgaggtg 42597507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 28318349 - 28318407
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||||||||| | ||||||||||| | ||||||||||  || |||||||||    
T  28318349 gaacttctacggtacacttataaaatgaggtgtatcggtactcctgcttcttaatttta 28318407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 29960271 - 29960229
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||| ||||||||||||| ||||||||||| ||||||||||    
T  29960271 gaacttttacggtacactcataaaatgaggtgtaccggtactc 29960229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 40563117 - 40563159
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||||||| ||||||||||| |||| |||||    
T  40563117 gaacttctacggtacactcataaaatgaggtgtaccgatactc 40563159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 182
Target Start/End: Original strand, 42486611 - 42486649
Alignment:
Q  144 ttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  42486611 ttctacggtacactcacaaagtgaggtgtaccggtactc 42486649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 5140672 - 5140721
Alignment:
Q  141 aacttctacggtacac-tcacaaaatgaggtgcaccggtactcctatttt 189  Q
    |||||||||||||||| ||||||| ||||||| |||||||||||| ||||    
T  5140672 aacttctacggtacacctcacaaattgaggtgtaccggtactcctgtttt 5140721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 5512684 - 5512729
Alignment:
Q  140 gaacttctacggtacac-tcacaaaatgaggtgcaccggtactcct 184  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  5512684 gaacttctacggtacacctcacaaattgaggtgtaccggtactcct 5512729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 39939035 - 39939080
Alignment:
Q  140 gaacttctacggtacac-tcacaaaatgaggtgcaccggtactcct 184  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  39939035 gaacttctacggtacacctcacaaattgaggtgtaccggtactcct 39939080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 28332526 - 28332478
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattt 188  Q
    ||||||||||||||||||  |||| | ||||| ||||||||||||||||    
T  28332526 gaacttctacggtacacttgcaaattaaggtgtaccggtactcctattt 28332478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 30753427 - 30753463
Alignment:
Q  144 ttctacggtacactcacaaaatgaggtgcaccggtac 180  Q
    ||||||||||||||||||||||||| || ||||||||    
T  30753427 ttctacggtacactcacaaaatgagatgtaccggtac 30753463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 37675935 - 37675994
Alignment:
Q  136 aagagaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatt 195  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||| || ||||||    
T  37675935 aagagaatttctacggtacactcacaaaatgaggtgtaccggtactcctacttcttaatt 37675994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 41720653 - 41720595
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||||||||||||||||||||||  ||||||||| ||| ||||||||||||    
T  41720653 gaacttctacggtacactcacaaaatgaggtataccggtacttctactttttaatttta 41720595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 118216 - 118170
Alignment:
Q  138 gagaacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||    
T  118216 gagaacttctatggtacactcacaaaatgaggtgtaccggtactcct 118170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 39646635 - 39646697
Alignment:
Q  136 aagagaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||||||||||||| | ||||| ||||| ||||||||||||| || |||||||||    
T  39646635 aagagaacttctacggtacacttataaaataaggtgtaccggtactcctacttcttaatttta 39646697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 2749317 - 2749359
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||| ||||||||||||||||| ||||||||||    
T  2749317 gaacttctacggtaaactcacaaaatgaggtgtaccggtactc 2749359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 9497947 - 9497901
Alignment:
Q  136 aagagaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||||    
T  9497947 aagagaacttctacggtacactcacaagatgaggtgtatcggtactc 9497901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 39300086 - 39300127
Alignment:
Q  141 aacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    ||||| ||||||||||||||||||||||||| ||||||||||    
T  39300086 aacttttacggtacactcacaaaatgaggtgtaccggtactc 39300127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 1043464 - 1043420
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    |||||||||||||||||||||||| |||||||||| |||| ||||    
T  1043464 gaacttctacggtacactcacaaagtgaggtgcactggtattcct 1043420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 2261418 - 2261374
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    ||||||||| |||||||||||||| ||||||| ||||||||||||    
T  2261418 gaacttctatggtacactcacaaagtgaggtgtaccggtactcct 2261374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 7128092 - 7128136
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    ||||||||| |||||||||||||||||||||| |||| |||||||    
T  7128092 gaacttctatggtacactcacaaaatgaggtgtaccgatactcct 7128136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 29454145 - 29454189
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||    
T  29454145 gaacttctacggtacactcacaaagtaaggtgtaccggtactcct 29454189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 10706552 - 10706599
Alignment:
Q  135 caagagaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||| |||||||||||||||||||||||| ||||||| || |||||||    
T  10706552 caagggaacttctacggtacactcacaaagtgaggtgtactggtactc 10706599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 182
Target Start/End: Original strand, 44000566 - 44000605
Alignment:
Q  143 cttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    ||||||||||||||||||||||||||||| | ||||||||    
T  44000566 cttctacggtacactcacaaaatgaggtgtatcggtactc 44000605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 29265591 - 29265633
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||| ||||||||||||| ||||||| ||||||||||    
T  29265591 gaacttctactgtacactcacaaagtgaggtgtaccggtactc 29265633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 15231390 - 15231350
Alignment:
Q  141 aacttctacggtacactcacaaaatgaggtgcaccggtact 181  Q
    ||||||||||||||||||| ||| ||||||| |||||||||    
T  15231390 aacttctacggtacactcataaagtgaggtgtaccggtact 15231350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 27045097 - 27045054
Alignment:
Q  141 aacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27045097 aacttctacggtacactcacaaaatgaggtgcaccggtactcct 27045054  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 53289232 - 53289290
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  || |||||||||    
T  53289232 gaacttctacggtacactcacaaaatgaggtgtaccggtactcctgcttcttaatttta 53289290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 46507361 - 46507420
Alignment:
Q  138 gagaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||||||||||||||||||||||||| | ||||||| || |||||||||||||    
T  46507361 gagaacttctacggtacactcacaaaatgaggtgtatcggtact-ctgttttttaatttta 46507420  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 4817082 - 4817136
Alignment:
Q  144 ttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||||||||||||||||||| |||||||||| || ||| ||||||||    
T  4817082 ttctacggtacactcacaaaatgaggtgtaccggtactcttactttataatttta 4817136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 29388697 - 29388755
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||||| ||||||||||||||||| ||| ||||||||| || |||||||||    
T  29388697 gaacttctacggtatactcacaaaatgaggtgtaccagtactcctacttcttaatttta 29388755  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 37520704 - 37520746
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  37520704 gaacttctacggtacactcacaaaatgaggtgtaccggtactc 37520746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 39987353 - 39987411
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||| ||||||| ||||||||||| |||||||||||| ||| |||||||||    
T  39987353 gaacttctacgggacactcataaaatgaggtgtaccggtactcctgtttcttaatttta 39987411  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 44653575 - 44653533
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  44653575 gaacttctacggtacactcacaaaatgaggtgtaccggtactc 44653533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 47746236 - 47746191
Alignment:
Q  137 agagaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||    
T  47746236 agagaacttctacggtacactcacaaaatgaggtgtaccgatactc 47746191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 1129131 - 1129175
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  1129131 gaacttctacggtacactcacaaagtgaggtgtaccggtactcct 1129175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 35501194 - 35501150
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||    
T  35501194 gaacttctatggtacactcacaaaatgaggtgtaccggtactcct 35501150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 40478162 - 40478118
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  40478162 gaacttctacggtacactcacaaagtgaggtgtaccggtactcct 40478118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 44379416 - 44379460
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  44379416 gaacttctacggtacactcacaaagtgaggtgtaccggtactcct 44379460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 23456861 - 23456818
Alignment:
Q  141 aacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||    
T  23456861 aacttctacggtacactcacaaagtgaggtgtaccggtactcct 23456818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 26884975 - 26885017
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  26884975 gaacttctacggtacactcacaagatgaggtgtaccggtactc 26885017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 41982389 - 41982331
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||||||||||||||| ||||||| | |||||||| || ||| ||||||||    
T  41982389 gaacttctacggtacactcacaaagtgaggtgtatcggtactcttactttataatttta 41982331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 42621850 - 42621892
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||||||||||||||||||| ||| ||||||    
T  42621850 gaacttctacggtacactcacaaaatgaggtgtaccagtactc 42621892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 54428899 - 54428841
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||| ||||||||| ||||||||||| |||| ||||||| ||| |||||||||    
T  54428899 gaacttctactgtacactcataaaatgaggtgtaccgatactcctgtttcttaatttta 54428841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 1021378 - 1021334
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    ||||||||||| |||||||||||||||||||| | ||||||||||    
T  1021378 gaacttctacgatacactcacaaaatgaggtgtatcggtactcct 1021334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 8966345 - 8966291
Alignment:
Q  130 attttcaagagaacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    ||||| ||| |||||||||||||||||||| ||| | ||||| ||||||||||||    
T  8966345 atttttaagggaacttctacggtacactcataaattaaggtgtaccggtactcct 8966291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 15997225 - 15997183
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||||||| || |||||||| ||||||||||    
T  15997225 gaacttctacggtacactcataagatgaggtgtaccggtactc 15997183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 26850330 - 26850272
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    ||||||||| |||||||| | ||||||||||| | ||||||||||| || |||||||||    
T  26850330 gaacttctatggtacacttataaaatgaggtgtatcggtactcctacttcttaatttta 26850272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 29806413 - 29806371
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    ||||||||||||||||||| |||| ||||||| ||||||||||    
T  29806413 gaacttctacggtacactcgcaaattgaggtgtaccggtactc 29806371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 30349408 - 30349350
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||||||||||||||||||| ||| | ||||||| ||  || |||||||||    
T  30349408 gaacttctacggtacactcacaaaatgaagtgtatcggtacttctgcttcttaatttta 30349350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 32637039 - 32636989
Alignment:
Q  132 tttcaagagaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    ||||||| ||| |||||||||||||||||||| ||||||| |||| |||||    
T  32637039 tttcaagggaatttctacggtacactcacaaagtgaggtgtaccgatactc 32636989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 42479089 - 42479047
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||| ||||||||| ||||| ||||||||||    
T  42479089 gaacttctacggtacattcacaaaataaggtgtaccggtactc 42479047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 48795434 - 48795484
Alignment:
Q  133 ttcaagagaacttctacggtaca-ctcacaaaatgaggtgcaccggtactc 182  Q
    |||||| |||||||||||||||| |||||||| ||||||| ||||||||||    
T  48795434 ttcaagggaacttctacggtacacctcacaaattgaggtgtaccggtactc 48795484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 7352169 - 7352226
Alignment:
Q  141 aacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    ||||||| |||||||||||||||||||| || | ||||||||||  || |||||||||    
T  7352169 aacttctgcggtacactcacaaaatgagatgtatcggtactcctgcttcttaatttta 7352226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 9507302 - 9507265
Alignment:
Q  145 tctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  9507302 tctacggtacactcacaagatgaggtgtaccggtactc 9507265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 9515277 - 9515240
Alignment:
Q  145 tctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  9515277 tctacggtacactcacaagatgaggtgtaccggtactc 9515240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 19547893 - 19547848
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactccta 185  Q
    ||||||||||||||||| |||||| | ||||| |||||||||||||    
T  19547893 gaacttctacggtacacccacaaattaaggtgtaccggtactccta 19547848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 29698324 - 29698369
Alignment:
Q  140 gaacttctacggtacac-tcacaaaatgaggtgcaccggtactcct 184  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  29698324 gaacttctacggtacacctcacaaattgaggtgtaccggtactcct 29698369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 32121901 - 32121946
Alignment:
Q  140 gaacttctacggtacac-tcacaaaatgaggtgcaccggtactcct 184  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  32121901 gaacttctacggtacacctcacaaagtgaggtgtaccggtactcct 32121946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 36220810 - 36220769
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtact 181  Q
    |||||||||||||||||||||||| ||||||| |||| ||||    
T  36220810 gaacttctacggtacactcacaaagtgaggtgtaccgatact 36220769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 37127807 - 37127848
Alignment:
Q  141 aacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||    
T  37127807 aacttctacggtacactcataaaatgaggtgtaccagtactc 37127848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 41217461 - 41217428
Alignment:
Q  138 gagaacttctacggtacactcacaaaatgaggtg 171  Q
    |||||||||||||||||||||||||||| |||||    
T  41217461 gagaacttctacggtacactcacaaaataaggtg 41217428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 25834634 - 25834590
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    |||||||||||||||||||| ||| |||| || ||||||||||||    
T  25834634 gaacttctacggtacactcataaagtgagatgtaccggtactcct 25834590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 40474239 - 40474195
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    ||||||||| |||||||||| ||| ||||||| ||||||||||||    
T  40474239 gaacttctatggtacactcataaagtgaggtgtaccggtactcct 40474195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 51344776 - 51344732
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    |||||||||||||||||| ||||| | ||||| ||||||||||||    
T  51344776 gaacttctacggtacacttacaaagtaaggtgtaccggtactcct 51344732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 140 - 195
Target Start/End: Complemental strand, 9589518 - 9589463
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatt 195  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| || ||||||    
T  9589518 gaacttctacggtacactcacaaaatgaggtgtaccggtactcctacttcttaatt 9589463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 7673297 - 7673355
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  || |||||||||    
T  7673297 gaacttctacggtacactcacaaaatgaggtgtaccggtactcctgcttcttaatttta 7673355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 25331457 - 25331515
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  || |||||||||    
T  25331457 gaacttctacggtacactcacaaaatgaggtgtaccggtactcctgcttcttaatttta 25331515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 32602305 - 32602363
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  || |||||||||    
T  32602305 gaacttctacggtacactcacaaaatgaggtgtaccggtactcctgcttcttaatttta 32602363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 21404200 - 21404255
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatt 195  Q
    |||||||||||||||||||||||||||||||| |||| |||||||| || ||||||    
T  21404200 gaacttctacggtacactcacaaaatgaggtgtaccgatactcctacttcttaatt 21404255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 40495851 - 40495793
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||| |||||||||||||||||||||||||| |||| || ||| |||||||||    
T  40495851 gaacttctactgtacactcacaaaatgaggtgcaccgatacttctgtttcttaatttta 40495793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 17451285 - 17451342
Alignment:
Q  141 aacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||  || |||||||||    
T  17451285 aacttctacggtacactcacaaaataaggtgtaccggtactcctgcttcttaatttta 17451342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 45157920 - 45157876
Alignment:
Q  138 gagaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||||||||||||||||||||| |||| |||||    
T  45157920 gagaacttctacggtacactcacaaaatgaggtgtaccgatactc 45157876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 6945750 - 6945704
Alignment:
Q  136 aagagaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||||||||||| || |||||||| ||||||||||    
T  6945750 aagagaacttctacggtacactcataagatgaggtgtaccggtactc 6945704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 9122158 - 9122216
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||||||||||||||||| ||||| ||||||||| ||  || |||||||||    
T  9122158 gaacttctacggtacactcacaaaataaggtgtaccggtacttctgcttcttaatttta 9122216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 32401081 - 32401123
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  32401081 gaacttctacggtacactcacaagatgaggtgtaccggtactc 32401123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 182
Target Start/End: Original strand, 1580253 - 1580291
Alignment:
Q  144 ttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  1580253 ttctacggtacactcacaaagtgaggtgtaccggtactc 1580291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 171
Target Start/End: Original strand, 36754339 - 36754369
Alignment:
Q  141 aacttctacggtacactcacaaaatgaggtg 171  Q
    |||||||||||||||||||||||||||||||    
T  36754339 aacttctacggtacactcacaaaatgaggtg 36754369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 43439997 - 43440055
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||| ||||||||||||||||||| |||| |||| ||  || |||||||||    
T  43439997 gaacttctacggcacactcacaaaatgaggtgtaccgatacttctgcttcttaatttta 43440055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 8333893 - 8333938
Alignment:
Q  140 gaacttctacggtacac-tcacaaaatgaggtgcaccggtactcct 184  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  8333893 gaacttctacggtacacctcacaaattgaggtgtaccggtactcct 8333938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 41555433 - 41555478
Alignment:
Q  140 gaacttctacggtacac-tcacaaaatgaggtgcaccggtactcct 184  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  41555433 gaacttctacggtacacctcacaaattgaggtgtaccggtactcct 41555478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 10851904 - 10851936
Alignment:
Q  190 ttaattttaggctaaactacagttttgaccccc 222  Q
    |||||| ||||||||||||||||||||||||||    
T  10851904 ttaattctaggctaaactacagttttgaccccc 10851936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 35895313 - 35895357
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    |||||| ||||||||||||| ||| ||||||| ||||||||||||    
T  35895313 gaacttttacggtacactcataaagtgaggtgtaccggtactcct 35895357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 23416901 - 23416843
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  || |||||||||    
T  23416901 gaacttctacggtacactcacaaaatgaggtgtaccggtactcctgcttcttaatttta 23416843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 4509833 - 4509789
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  4509833 gaacttctacggtacactcacaaagtgaggtgtaccggtactcct 4509789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 198
Target Start/End: Original strand, 33574242 - 33574293
Alignment:
Q  147 tacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    ||||||||||||||||||||||||| ||||||||||||  || |||||||||    
T  33574242 tacggtacactcacaaaatgaggtgtaccggtactcctgcttcttaatttta 33574293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 8549565 - 8549607
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||||||||||||||||||| |||| |||||    
T  8549565 gaacttctacggtacactcacaaaatgaggtgtaccgatactc 8549607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 9687183 - 9687149
Alignment:
Q  137 agagaacttctacggtacactcacaaaatgaggtg 171  Q
    |||||||||||||||||||||||||||||||||||    
T  9687183 agagaacttctacggtacactcacaaaatgaggtg 9687149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 33574757 - 33574715
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  33574757 gaacttctacggtacactcacaaagtgaggtgtaccggtactc 33574715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 33574935 - 33574893
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  33574935 gaacttctacggtacactcacaaagtgaggtgtaccggtactc 33574893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 11763175 - 11763219
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    |||||||||||||||||||||| | ||||||| ||||||||||||    
T  11763175 gaacttctacggtacactcacagagtgaggtgtaccggtactcct 11763219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 23069104 - 23069060
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||    
T  23069104 gaacttttacggtacactcacaaagtgaggtgtaccggtactcct 23069060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 18772269 - 18772206
Alignment:
Q  135 caagagaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||| |||||||||||||||||||||||| ||| ||| | ||||||||||| ||  ||||||||    
T  18772269 caagggaacttctacggtacactcacaaagtgaagtgtatcggtactcctacttcataatttta 18772206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 14779307 - 14779265
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||| ||||||||||||||||||| | ||||||||||    
T  14779307 gaacttctacagtacactcacaaaatgaggggtaccggtactc 14779265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 10966028 - 10965983
Alignment:
Q  140 gaacttctacggtacac-tcacaaaatgaggtgcaccggtactcct 184  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  10966028 gaacttctacggtacacctcacaaattgaggtgtaccggtactcct 10965983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 1857208 - 1857150
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  || |||||||||    
T  1857208 gaacttctacggtacactcacaaaatgaggtgtaccggtactcctgcttcttaatttta 1857150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 29364586 - 29364528
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||  ||||||||||||    
T  29364586 gaacttctactgtacactcacaaaatgaggtgtaccggtactcctgctttttaatttta 29364528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 27990538 - 27990596
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||  || |||||||||    
T  27990538 gaacttctacgatacactcacaaaatgaggtgtaccggtactcctgcttcttaatttta 27990596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 198
Target Start/End: Original strand, 24535491 - 24535542
Alignment:
Q  147 tacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    ||||||||||||||||||||||||| ||||||||||||  || |||||||||    
T  24535491 tacggtacactcacaaaatgaggtgtaccggtactcctgcttcttaatttta 24535542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 24979942 - 24979985
Alignment:
Q  138 gagaacttctacggtacactcacaaaatgaggtgcaccggtact 181  Q
    |||||||||||||||||||||||||||| ||||| |||||||||    
T  24979942 gagaacttctacggtacactcacaaaataaggtgtaccggtact 24979985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 126982 - 126924
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||||||||||| ||||||||||| | ||||||||||  || |||||||||    
T  126982 gaacttctacggtacactcataaaatgaggtgtatcggtactcctgcttcttaatttta 126924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 26118157 - 26118115
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  26118157 gaacttctacggtacactcacaagatgaggtgtaccggtactc 26118115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 28835790 - 28835848
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||| ||||||||||||||||||||||||| || |||||||||  || |||||||||    
T  28835790 gaacttttacggtacactcacaaaatgaggtgaactggtactcctgcttcttaatttta 28835848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 42177344 - 42177386
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||||||||||||||||||| | ||||||||    
T  42177344 gaacttctacggtacactcacaaaatgaggtgtatcggtactc 42177386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 8256845 - 8256788
Alignment:
Q  141 aacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    ||||| ||||||||||||||||||||||||| | ||||||||||  || |||||||||    
T  8256845 aacttttacggtacactcacaaaatgaggtgtatcggtactcctccttcttaatttta 8256788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 8270263 - 8270206
Alignment:
Q  141 aacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    ||||| ||||||||||||||||||||||||| | ||||||||||  || |||||||||    
T  8270263 aacttttacggtacactcacaaaatgaggtgtatcggtactcctccttcttaatttta 8270206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 29582370 - 29582329
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtact 181  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  29582370 gaacttctacggtacactcacaaattgaggtgtaccggtact 29582329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 36631038 - 36631079
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtact 181  Q
    |||||||||||||||||||||||||||||||| | |||||||    
T  36631038 gaacttctacggtacactcacaaaatgaggtgtaacggtact 36631079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 50733261 - 50733204
Alignment:
Q  141 aacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||| |||||||||||||||||| || || | |||||||||| |||||||||||||    
T  50733261 aacttccacggtacactcacaaaataagatgtatcggtactcctgttttttaatttta 50733204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 50608090 - 50608058
Alignment:
Q  139 agaacttctacggtacactcacaaaatgaggtg 171  Q
    |||||||||||||||||||||||||||||||||    
T  50608090 agaacttctacggtacactcacaaaatgaggtg 50608058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 56303244 - 56303184
Alignment:
Q  138 gagaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    ||||||||||| |||||||||| ||| ||||||| ||||||||||||  ||| ||||||||    
T  56303244 gagaacttctatggtacactcataaagtgaggtgtaccggtactcctgctttataatttta 56303184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 4720875 - 4720817
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||| ||||||||||||| ||||||||||| | ||||||||||  || |||||||||    
T  4720875 gaacttatacggtacactcataaaatgaggtgtatcggtactcctgcttcttaatttta 4720817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 23058767 - 23058809
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||||||||||| |||| || ||||||||||    
T  23058767 gaacttctacggtacactcacaaagtgagatgtaccggtactc 23058809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 30348165 - 30348207
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    ||||| |||||||||| ||||||||||||||| ||||||||||    
T  30348165 gaactactacggtacaatcacaaaatgaggtgtaccggtactc 30348207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 182
Target Start/End: Complemental strand, 34829123 - 34829085
Alignment:
Q  144 ttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  34829123 ttctacggtacactcacaagatgaggtgtaccggtactc 34829085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 43147901 - 43147859
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    ||||||||||||||||||||||| |||||||  ||||||||||    
T  43147901 gaacttctacggtacactcacaagatgaggtataccggtactc 43147859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 19527128 - 19527083
Alignment:
Q  140 gaacttctacggtacac-tcacaaaatgaggtgcaccggtactcct 184  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  19527128 gaacttctacggtacacctcacaaattgaggtgtaccggtactcct 19527083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 39103539 - 39103584
Alignment:
Q  140 gaacttctacggtacac-tcacaaaatgaggtgcaccggtactcct 184  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  39103539 gaacttctacggtacacctcacaaattgaggtgtaccggtactcct 39103584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 52607571 - 52607612
Alignment:
Q  141 aacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    ||||||||||||||| |||||| |||||||| ||||||||||    
T  52607571 aacttctacggtacattcacaagatgaggtgtaccggtactc 52607612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 33491164 - 33491208
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    |||||||||||||||| ||||||| |||| || ||||||||||||    
T  33491164 gaacttctacggtacattcacaaagtgagatgtaccggtactcct 33491208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 2249589 - 2249647
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||| ||||||||||||||||||||||| | |||||||||| ||| |||||||||    
T  2249589 gaacttctgcggtacactcacaaaatgaggtgtatcggtactcctgtttcttaatttta 2249647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 6966309 - 6966255
Alignment:
Q  144 ttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||||||||||||||||||| ||||||||||||  || |||||||||    
T  6966309 ttctacggtacactcacaaaatgaggtgtaccggtactcctcattcttaatttta 6966255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 12105162 - 12105204
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  12105162 gaacttctacggtacactcacaaaatgaggtgtaccggtactc 12105204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 13202938 - 13202996
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||| ||||||||| ||||||||||| |||||||||||| ||| |||||||||    
T  13202938 gaacttctactgtacactcagaaaatgaggtgtaccggtactcctgtttcttaatttta 13202996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 31821573 - 31821631
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||||||||||||||||||||||| | ||||||||||  || |||||||||    
T  31821573 gaacttctacggtacactcacaaaatgaggtgtagcggtactcctgcttcttaatttta 31821631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 45622482 - 45622540
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||| |||| |||||||||||||||||||| ||||||||||||| || |||||||||    
T  45622482 gaacttatacgttacactcacaaaatgaggtgtaccggtactcctacttcttaatttta 45622540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 46641921 - 46641863
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||  || |||||||||    
T  46641921 gaacttctacggtacactcgcaaaatgaggtgtaccggtactcctgcttcttaatttta 46641863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 47544701 - 47544643
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||  || |||||||||    
T  47544701 gaacttctatggtacactcacaaaatgaggtgtaccggtactcctgcttcttaatttta 47544643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 34038162 - 34038207
Alignment:
Q  139 agaacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||    
T  34038162 agaacttctacggtacactcacaaagtgaggtgtaccggtactcct 34038207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 38718135 - 38718078
Alignment:
Q  141 aacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    ||||||||||||||||||||||||||||||| | ||||||||||  || |||||||||    
T  38718135 aacttctacggtacactcacaaaatgaggtgtatcggtactcctccttattaatttta 38718078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 44264070 - 44264003
Alignment:
Q  131 ttttcaagagaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||| ||| |||| ||||||||||||||||||| ||||||| |||||||||||| |||  ||||||||    
T  44264070 tttttaagggaacatctacggtacactcacaaagtgaggtgtaccggtactcctgtttcataatttta 44264003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 48760467 - 48760424
Alignment:
Q  141 aacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    ||||||||||||||||||||||||||||||  ||||||||||||    
T  48760467 aacttctacggtacactcacaaaatgaggtataccggtactcct 48760424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 24003421 - 24003479
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||||||||| |||||||||||||  |||||||||||  || |||||||||    
T  24003421 gaacttctacggtacactaacaaaatgaggtgttccggtactcctgcttcttaatttta 24003479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 52345601 - 52345643
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  52345601 gaacttctacggtacactcacaaagtgaggtgtaccggtactc 52345643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 10408699 - 10408658
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtact 181  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  10408699 gaacttctacggtacactcacaaagtgaggtgtaccggtact 10408658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 52861300 - 52861357
Alignment:
Q  141 aacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    ||||| ||||||||||||||||||||||||| ||||||||| ||  || |||||||||    
T  52861300 aacttttacggtacactcacaaaatgaggtgtaccggtacttctgcttcttaatttta 52861357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 38261207 - 38261163
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||||    
T  38261207 gaacttctacggtacactcataaagtgaggtgtaccggtactcct 38261163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 46362025 - 46362065
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtac 180  Q
    |||||||||||||||| ||||||||||||||| ||||||||    
T  46362025 gaacttctacggtacattcacaaaatgaggtgtaccggtac 46362065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 47693601 - 47693561
Alignment:
Q  142 acttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    ||||||| |||||||||||||||||||||| ||||||||||    
T  47693601 acttctatggtacactcacaaaatgaggtgtaccggtactc 47693561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 52180641 - 52180593
Alignment:
Q  136 aagagaacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    ||||||||||||| |||| ||||||||| ||||||| ||||||||||||    
T  52180641 aagagaacttctatggtatactcacaaagtgaggtgtaccggtactcct 52180593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 8396749 - 8396695
Alignment:
Q  144 ttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||||||| ||||||||||| | ||||||||||  || |||||||||    
T  8396749 ttctacggtacactcataaaatgaggtgtatcggtactcctgcttcttaatttta 8396695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 10348029 - 10348087
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||||||||||||||||| | ||| |||| |||||||  || |||||||||    
T  10348029 gaacttctacggtacactcacaaaataaagtgtaccgatactcctgcttcttaatttta 10348087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 25702437 - 25702479
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||    
T  25702437 gaacttctacggtacactcataaattgaggtgtaccggtactc 25702479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 30572708 - 30572674
Alignment:
Q  137 agagaacttctacggtacactcacaaaatgaggtg 171  Q
    ||||||||||||||||||| |||||||||||||||    
T  30572708 agagaacttctacggtacattcacaaaatgaggtg 30572674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 35873938 - 35873979
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtact 181  Q
    |||||||||||||||||||||||| |||| || |||||||||    
T  35873938 gaacttctacggtacactcacaaagtgagatgtaccggtact 35873979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 40054992 - 40054947
Alignment:
Q  140 gaacttctacggtacac-tcacaaaatgaggtgcaccggtactcct 184  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  40054992 gaacttctacggtacacctcacaaattgaggtgtaccggtactcct 40054947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 43916348 - 43916393
Alignment:
Q  140 gaacttctacggtacac-tcacaaaatgaggtgcaccggtactcct 184  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  43916348 gaacttctacggtacacctcacaaattgaggtgtaccggtactcct 43916393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 46235245 - 46235196
Alignment:
Q  131 ttttcaagagaacttctacggtacactcacaaaatgaggtgcaccggtac 180  Q
    |||| ||| |||||||||||||||||| ||||||||||||| || |||||    
T  46235245 tttttaagggaacttctacggtacacttacaaaatgaggtgtactggtac 46235196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 50631595 - 50631640
Alignment:
Q  140 gaacttctacggtacac-tcacaaaatgaggtgcaccggtactcct 184  Q
    ||||||||||||||||| ||||||| ||||||||||||||| ||||    
T  50631595 gaacttctacggtacacatcacaaattgaggtgcaccggtaatcct 50631640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 2247456 - 2247408
Alignment:
Q  133 ttcaagagaacttctacggtacactcacaaaatgaggtgcaccggtact 181  Q
    |||| ||||||||||||||||||| |||||| | ||||| |||||||||    
T  2247456 ttcaggagaacttctacggtacacccacaaattaaggtgtaccggtact 2247408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 6468793 - 6468837
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    |||||||||||||||||||||||||| | | | ||||||||||||    
T  6468793 gaacttctacggtacactcacaaaataaagcgtaccggtactcct 6468837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 9588048 - 9588004
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    |||||||||||||||||||| ||| ||||||  ||||||||||||    
T  9588048 gaacttctacggtacactcataaagtgaggtataccggtactcct 9588004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 24230571 - 24230615
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    |||||||||||||||||||||||| ||||||| |  |||||||||    
T  24230571 gaacttctacggtacactcacaaagtgaggtgtaatggtactcct 24230615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 24381726 - 24381682
Alignment:
Q  138 gagaacttctacggtacactcacaaaatgaggtgcaccggtactc 182  Q
    ||||||||||||||||||||||||||  || ||| ||||||||||    
T  24381726 gagaacttctacggtacactcacaaagcgaagtgtaccggtactc 24381682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 31530309 - 31530353
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    |||||||||| ||||||| ||||||||||||| || |||||||||    
T  31530309 gaacttctaccgtacacttacaaaatgaggtgtactggtactcct 31530353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 48976877 - 48976921
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    |||||||||||| ||||||||||| ||||||| | ||||||||||    
T  48976877 gaacttctacggcacactcacaaagtgaggtgtatcggtactcct 48976921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0923 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0923
Description:

Target: scaffold0923; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 89 - 45
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 184  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  89 gaacttctacggtacactcacaaagtgaggtgtaccggtactcct 45  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1319 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold1319
Description:

Target: scaffold1319; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 45 - 103
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 198  Q
    |||||||||||||||||||||||||||||||| |  |||||||||  || |||||||||    
T  45 gaacttctacggtacactcacaaaatgaggtgtattggtactcctgcttcttaatttta 103  T

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Target: scaffold0667 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 237 - 196
Alignment:
Q  140 gaacttctacggtacactcacaaaatgaggtgcaccggtact 181  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  237 gaacttctacggtacactcacaaagtgaggtgtaccggtact 196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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