View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20148_low_62 (Length: 215)

Name: NF20148_low_62
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20148_low_62
NF20148_low_62
[»] chr4 (2 HSPs)
chr4 (11-198)||(3294726-3294913)
chr4 (110-155)||(49496851-49496895)
[»] chr7 (1 HSPs)
chr7 (109-177)||(10531045-10531113)
[»] chr2 (2 HSPs)
chr2 (110-198)||(28502839-28502927)
chr2 (110-155)||(19710404-19710448)
[»] chr1 (2 HSPs)
chr1 (110-189)||(51444399-51444479)
chr1 (110-155)||(24274818-24274862)
[»] scaffold0657 (1 HSPs)
scaffold0657 (110-155)||(5552-5596)
[»] chr6 (2 HSPs)
chr6 (110-155)||(25003813-25003857)
chr6 (110-155)||(34635177-34635221)
[»] chr3 (1 HSPs)
chr3 (110-155)||(16473947-16473991)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 11 - 198
Target Start/End: Complemental strand, 3294913 - 3294726
Alignment:
Q  11 aagaatatatatgtagaaaaagattggcaagacagagatcgaaagaatgaagggcatgacacacactcaagtaacacaaattgaaagtaaaaatggtaat 110  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3294913 aagaaaatatatgtagaaaaagattggcaagacagagatcgaaagaatgaagggcatgacacacactcaagtaacacaaattgaaagtaaaaatggtaat 3294814  T
Q  111 tacattattacccccttaagaattgtttcgtcctcgaaactagaagatctcaaaataaagataaagtttactatttaaatgataataa 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3294813 tacattattacccccttaagaattgtttcgtcctcgaaactagaagatctcaaaataaagataaagtttactatttcaatgataataa 3294726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 49496895 - 49496851
Alignment:
Q  110 ttacattattacccccttaagaattgtttcgtcctcgaaactagaa 155  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||    
T  49496895 ttacattattacccccttaa-aatagtttcgtcctcgaaactagaa 49496851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 10531045 - 10531113
Alignment:
Q  109 attacattattacccccttaagaattgtttcgtcctcgaaactagaagatctcaaaataaagataaagt 177  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||    
T  10531045 attacattattacccccttaaaaattgtttcgtcctcgaaactagaagctctcaaaataaaggtaaagt 10531113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 28502839 - 28502927
Alignment:
Q  110 ttacattattacccccttaagaattgtttcgtcctcgaaactagaagatctcaaaataaagataaagtttactatttaaatgataataa 198  Q
    |||||||||||||||||||| ||| ||||| |||||||||||||||||||| |||| || | ||| |||||||||||||||||||||||    
T  28502839 ttacattattacccccttaaaaatagtttcatcctcgaaactagaagatctaaaaaaaagggtaatgtttactatttaaatgataataa 28502927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 19710404 - 19710448
Alignment:
Q  110 ttacattattacccccttaagaattgtttcgtcctcgaaactagaa 155  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||    
T  19710404 ttacattattacccccttaa-aatagtttcgtcctcgaaactagaa 19710448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 51444399 - 51444479
Alignment:
Q  110 ttacattattacccccttaagaattgtttcgtcctcgaaactagaagatctc-aaaataaagataaagtttactatttaaa 189  Q
    |||||||||||||||||||| |||  |||||||| |||||||| |||||||| ||||||||| | ||||| ||||||||||    
T  51444399 ttacattattacccccttaaaaataatttcgtccccgaaactaaaagatctctaaaataaaggtcaagttcactatttaaa 51444479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 24274862 - 24274818
Alignment:
Q  110 ttacattattacccccttaagaattgtttcgtcctcgaaactagaa 155  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||    
T  24274862 ttacattattacccccttaa-aatagtttcgtcctcgaaactagaa 24274818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 5552 - 5596
Alignment:
Q  110 ttacattattacccccttaagaattgtttcgtcctcgaaactagaa 155  Q
    ||||||| |||||||||||| ||| |||||||||||||||||||||    
T  5552 ttacattcttacccccttaa-aatagtttcgtcctcgaaactagaa 5596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 25003857 - 25003813
Alignment:
Q  110 ttacattattacccccttaagaattgtttcgtcctcgaaactagaa 155  Q
    ||||||| |||||||||||| ||| |||||||||||||||||||||    
T  25003857 ttacattcttacccccttaa-aatagtttcgtcctcgaaactagaa 25003813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 34635221 - 34635177
Alignment:
Q  110 ttacattattacccccttaagaattgtttcgtcctcgaaactagaa 155  Q
    ||||||| |||||||||||| ||| |||||||||||||||||||||    
T  34635221 ttacattcttacccccttaa-aatagtttcgtcctcgaaactagaa 34635177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 16473991 - 16473947
Alignment:
Q  110 ttacattattacccccttaagaattgtttcgtcctcgaaactagaa 155  Q
    ||||||| |||||||||||| ||| |||||||||||||||||||||    
T  16473991 ttacattcttacccccttaa-aatagtttcgtcctcgaaactagaa 16473947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University