View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20148_low_69 (Length: 206)
Name: NF20148_low_69
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20148_low_69 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 6e-73; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 42570213 - 42570388
Alignment:
| Q |
13 |
cagagagtatatatcatcgagagatatggaaaatactttaaatctcttcctaccggcatccattttttgaacccttttgttgataaaattgctcgcgtcc |
112 |
Q |
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| T |
42570213 |
cagacagtatatatcatcgagagatatggaaaatactttaaatctcttcctaccggcatccattttttgaacccttttgttgataaaattgctcgcgtcc |
42570312 |
T |
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| Q |
113 |
atgatctatggnnnnnnnccctcta-tcttgatcgcctgcctgctttcaccaaggataacatcagcatgttcgtgg |
187 |
Q |
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| T |
42570313 |
atgatctatagaaaaaaaccctctattcttgatcgcctgcctgctttcaccaaggataacatcagcatgttcgtgg |
42570388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 42577398 - 42577512
Alignment:
| Q |
9 |
ggagcagagagtatatatcatcgagagatatggaaaatactttaaatctcttcctaccggcatccattttttgaacccttttgttgataaaattgctcgc |
108 |
Q |
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| T |
42577398 |
ggagcagacagtgtatatcattgagcgatatggaaagtactttaaaactcttcctaccggcgtccattttttgatcccttttgttgataaaattgcttgc |
42577497 |
T |
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| Q |
109 |
gtccatgatctatgg |
123 |
Q |
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| T |
42577498 |
gtccataagctatgg |
42577512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 42594084 - 42594189
Alignment:
| Q |
9 |
ggagcagagagtatatatcatcgagagatatggaaaatactttaaatctcttcctaccggcatccattttttgaacccttttgttgataaaattgctcgc |
108 |
Q |
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| T |
42594084 |
ggagcagacagtatatattgttgagagattcggaaaatacttcaagactctacctacaggcgtccattttttgaatccttttgtcgatgaagttgttcgc |
42594183 |
T |
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| Q |
109 |
gtccat |
114 |
Q |
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|||||| |
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| T |
42594184 |
gtccat |
42594189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 42572577 - 42572661
Alignment:
| Q |
21 |
atatatcatcgagagatatggaaaatactttaaatctcttcctaccggcatccattttttgaacccttttgttgataaaattgct |
105 |
Q |
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| T |
42572577 |
atatatcattgagcgatatggaaaatactttaaaactcttcccgccagctctctttttttgaatccttttctcgataaaattgct |
42572661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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