View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20148_low_8 (Length: 485)
Name: NF20148_low_8
Description: NF20148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20148_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 469
Target Start/End: Complemental strand, 13021655 - 13021197
Alignment:
| Q |
13 |
aaggtacaatgccatcaggaaaaccaaattcatcagcataacaataggtttaaattcaaatgtatcaatcacatcttggacctgaatttccaatttccaa |
112 |
Q |
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| T |
13021655 |
aaggtacaatgccatcaggaaaaccaaattcatcagcataacaatagttttaaattcaaatgtatcaatcacatcttggacctgaattttcaatttccaa |
13021556 |
T |
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| Q |
113 |
ataaaaa--ctccaaacatgaattgcagatcttttaaattcaacaataccaacttcttgatgtcggtaacactgatttttgggaaatttgatcattagtg |
210 |
Q |
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| T |
13021555 |
ataaaaaaactccaaacatgaattgcagatcttttaaattcaacgataccaacttcttgatgtcagtaacactgatttttgggaaatttgatcattagtg |
13021456 |
T |
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| Q |
211 |
caacaactatagggactgnnnnnnnnnnnnnnnngaggggaactatagggactgttagaaatagaaagttcctatctctaaattatatggttcctacagc |
310 |
Q |
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| T |
13021455 |
caacaactatagggacagtttttttattttttttgaggggaactatatggactgttagaaatagaaagttcctttctctaaattatacggttcctacagc |
13021356 |
T |
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| Q |
311 |
tgcgacgccatactgcagctgtatatgatccaggtttgatttttggacagtaggaaagtaaaattcaacaaaagttttcagcataaaatcagaaataccg |
410 |
Q |
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| T |
13021355 |
tacgacgccatactgcagctgtatatgatccaggtatgatttttggacagtaggatagtaaaattcaacaaaagttttcagcatagaatcagaaataccg |
13021256 |
T |
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| Q |
411 |
atctatacaactatactattcattcatcatcggcaaaaataagattcaatgagaatttt |
469 |
Q |
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| T |
13021255 |
atctatacaactatactattcattcatcatcggcaaaaataagattcaatgagaatttt |
13021197 |
T |
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