View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20149_low_1 (Length: 547)
Name: NF20149_low_1
Description: NF20149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20149_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 16 - 541
Target Start/End: Original strand, 39234336 - 39234863
Alignment:
| Q |
16 |
catttttgtccatgagctatg-cattgggctgattttttcgactcatcaaa-gcaaagtgatcaaagtatacaattcacataacttattatattttattt |
113 |
Q |
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| T |
39234336 |
catttttgtccatgagctatggcattgggctgattttttcaactcatcaaaagcaaagtgatcaaagtatacaattcatataacttattatattttattt |
39234435 |
T |
|
| Q |
114 |
atcacattatacagctaaagtttgattacttttggaataatggacccttaatatgtttttaaaactttaaagtggatatatgctttaaaaattcccgtca |
213 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39234436 |
atcacattatacggctaaagtttgattacttttggaataatggacccttaatatgtttttaaaactttaaggtggatatatgctttaaaaattcccgtca |
39234535 |
T |
|
| Q |
214 |
cagtacttcacagttaatcattttcgcctcgccacatctggtatatatgaatgtgcttttcattctcatgctcattgttcaagtcctcctatacttagta |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39234536 |
cagtacttcacagttaatcattttcgcctcgccacatctggtatatatgagtgtgcttttcattctcatgctcattgttcaagtcctcctatacttagta |
39234635 |
T |
|
| Q |
314 |
atcgtcaccatttgttttagactttgtctaacatgcataaaatagtgttacaccatgcataaattttattttcactattaaatcaataaatttcattaga |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39234636 |
atcgtcaccatttgttttagactttgtctaacatgcataaaatagtgttacaccatgcataaattttattttcactattaaatcaataaatttcattaga |
39234735 |
T |
|
| Q |
414 |
tatcatttaatttataggtgcgannnnnnnatctaatgataaaaacaaactatgtccttnnnnnnnncttatatatgatgcaacatttatctaatttatg |
513 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| ||| | |||||| |||||||||||||||||||||||||| |
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| T |
39234736 |
tatcatttaatttataggtgcgatttttttatctaatgataaaaacaaactatatccctaaaaaaaacttatacatgatgcaacatttatctaatttatg |
39234835 |
T |
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| Q |
514 |
caccatacataactttgacctttgcttc |
541 |
Q |
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| T |
39234836 |
caccatacataactttgacctttgcttc |
39234863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 427
Target Start/End: Complemental strand, 11210742 - 11210693
Alignment:
| Q |
378 |
tttattttcactattaaatcaataaatttcattagatatcatttaattta |
427 |
Q |
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|||||||| ||||||||||||||||| |||| || || |||||||||||| |
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| T |
11210742 |
tttatttttactattaaatcaataaaattcactatatgtcatttaattta |
11210693 |
T |
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