View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20149_low_10 (Length: 211)
Name: NF20149_low_10
Description: NF20149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20149_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 36902962 - 36903132
Alignment:
| Q |
17 |
caaaggcaaaacagctgaaaatatcttcaaggaatcacatgaaggtcttataaaagacagcaatgaatggctaaaaaacacagcagattcctgctcggtt |
116 |
Q |
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| T |
36902962 |
caaaggcaaaacagctgaaaatatcttcaaggaatcacatgaaggtcttataaaagacagcaatgaatggctaaaaaacacagcagattcctgctcggtt |
36903061 |
T |
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| Q |
117 |
gtagccgcgcttgtcgctggtgcttccttcaccacaacaagtgcagtacctggcggaacaactgagggtag |
187 |
Q |
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| T |
36903062 |
gtagccgcgcttgtcgctggtgcttccttcaccacaacaagtgcagtacctggcggaacaactgagggtag |
36903132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 181
Target Start/End: Original strand, 36893198 - 36893321
Alignment:
| Q |
58 |
aaggtcttataaaagacagcaatgaatggctaaaaaacacagcagattcctgctcggttgtagccgcgcttgtcgctggtgcttccttcaccacaacaag |
157 |
Q |
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||||||||||||||||||| | |||||||||||| ||||| | || |||||||| |||||| | || ||||| ||||||| |||||| ||||| |||| |
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| T |
36893198 |
aaggtcttataaaagacagtagcgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaag |
36893297 |
T |
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| Q |
158 |
tgcagtacctggcggaacaactga |
181 |
Q |
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| T |
36893298 |
cgctgtacctggcggcacaactga |
36893321 |
T |
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