View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20149_low_3 (Length: 358)
Name: NF20149_low_3
Description: NF20149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20149_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 43761143 - 43760930
Alignment:
| Q |
9 |
agcacagacctaatagagaatagcattaattgatttgaagttactttcacacctctctctactttatatatattttttcattttaaattacatgcaccct |
108 |
Q |
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| T |
43761143 |
agcacaaacctaatagagaatagcattaattgatttgaagttactttcacacctctctctactttatatatattttttcattttaaattacatgcaccct |
43761044 |
T |
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| Q |
109 |
tttcataaagaaagcaaataaaattaaacacaaaaaatctcacaggaaaggggtatcttgctttctttgttctgaagcctttgtcactttcttgcatatt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43761043 |
tttcataaagaaagcaaataaaattaaacacaaaaaatctcacaggaaaggggtatcttgctttctttgttctgaagcctttgtcactttcttgcatatt |
43760944 |
T |
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| Q |
209 |
aagtttggggtcac |
222 |
Q |
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|||||||||||||| |
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| T |
43760943 |
aagtttggggtcac |
43760930 |
T |
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