View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20149_low_4 (Length: 327)
Name: NF20149_low_4
Description: NF20149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20149_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 6094111 - 6093800
Alignment:
| Q |
1 |
ataggtgtttggaggaaatatttaatgaagcgaataccatattggataaactcgaatctcattctttgataaatgacatgtttggaggaagtgtggtatc |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6094111 |
ataggtgtttggaggaaatatttaatgaagggaataccgtattggataaactcgaatctcattctttgataaatgacatgtttggaggaagtgtggtatc |
6094012 |
T |
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| Q |
101 |
tacacatcgcttgatgatagatatggcatgttatattttgaaagagagtgggaggaatgttatggtgaaattaaatagcagattgacaaagatatcactc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6094011 |
tacacatcgcttgatgatagatatggcatgttatatttttaaagagagtgggaggaatgttatggtgaaattaaatagcagattgacaaagatatcactc |
6093912 |
T |
|
| Q |
201 |
gtgcaagaattgaaaactgatttagagttggttcatatgtatgattgtgatatagaagaaatctcagaggaaatgtcaccatattgtccgatgttgtcca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| |
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| T |
6093911 |
gtgcaagaattgaaaactgatttagagttggttcatatgtatgattgtgatatagaagaaatctcagaggacatgtcaccatattgtccgatgatatcca |
6093812 |
T |
|
| Q |
301 |
ctatgatcataa |
312 |
Q |
| |
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|||||||||||| |
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| T |
6093811 |
ctatgatcataa |
6093800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 215 - 301
Target Start/End: Complemental strand, 6180065 - 6179979
Alignment:
| Q |
215 |
aactgatttagagttggttcatatgtatgattgtgatatagaagaaatctcagaggaaatgtcaccatattgtccgatgttgtccac |
301 |
Q |
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| T |
6180065 |
aactgatttagagttggttcatatgcaagattgtgatctagaagaaatcccagagggcatgtcacctgattgtccgaagctgtccac |
6179979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 297
Target Start/End: Complemental strand, 6105671 - 6105589
Alignment:
| Q |
215 |
aactgatttagagttggttcatatgtatgattgtgatatagaagaaatctcagaggaaatgtcaccatattgtccgatgttgt |
297 |
Q |
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||||||||||||||||||||||||| |||| ||| |||||||||||| |||| | |||||||| ||||||||| ||||| |
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| T |
6105671 |
aactgatttagagttggttcatatgcgggattatgacatagaagaaatcccagaaggcatgtcacctaattgtccgaagttgt |
6105589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 297
Target Start/End: Complemental strand, 6207615 - 6207533
Alignment:
| Q |
215 |
aactgatttagagttggttcatatgtatgattgtgatatagaagaaatctcagaggaaatgtcaccatattgtccgatgttgt |
297 |
Q |
| |
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| T |
6207615 |
aactgatttagagttggttcatatgcgggattatgacatagaagaaatcccagaaggcatgtcacctaattgtccgaagttgt |
6207533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 297
Target Start/End: Complemental strand, 6234033 - 6233951
Alignment:
| Q |
215 |
aactgatttagagttggttcatatgtatgattgtgatatagaagaaatctcagaggaaatgtcaccatattgtccgatgttgt |
297 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||| |||||||||||| |||| | |||||||| ||||||||| ||||| |
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|
| T |
6234033 |
aactgatttagagttggttcatatgcgggattatgacatagaagaaatcccagaaggcatgtcacctaattgtccgaagttgt |
6233951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 6237115 - 6237053
Alignment:
| Q |
8 |
tttggaggaaatatttaatgaagcgaataccatattggataaactcgaatctcattctttgat |
70 |
Q |
| |
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|||||| ||||||||| |||||| ||||||||||||| |||| || ||||| ||||||||||| |
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| T |
6237115 |
tttggaagaaatatttgatgaagggaataccatattgaataagcttgaatcccattctttgat |
6237053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 6247102 - 6247037
Alignment:
| Q |
5 |
gtgtttggaggaaatatttaatgaagcgaataccatattggataaactcgaatctcattctttgat |
70 |
Q |
| |
|
||||||||| ||||||||| ||||| ||||||||||||| |||| || ||||| ||||||||||| |
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| T |
6247102 |
gtgtttggaagaaatatttgttgaagggaataccatattgaataagcttgaatcccattctttgat |
6247037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 6088627 - 6088561
Alignment:
| Q |
106 |
atcgcttgatgatagatatggcatgttatattttgaaagagagtgggaggaatgttatggtgaaatt |
172 |
Q |
| |
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|||||||| ||||||| |||||||||||||| ||||||||||| | | |||| |||||||||||| |
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| T |
6088627 |
atcgcttggtgatagacatggcatgttatatcatgaaagagagtaagcgaaatgctatggtgaaatt |
6088561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 6236911 - 6236858
Alignment:
| Q |
215 |
aactgatttagagttggttcatatgtatgattgtgatatagaagaaatctcaga |
268 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||| |||||||||||| |||| |
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| T |
6236911 |
aactgatttagagttggttcatatgcgggattatgacatagaagaaatcccaga |
6236858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 6207817 - 6207757
Alignment:
| Q |
10 |
tggaggaaatatttaatgaagcgaataccatattggataaactcgaatctcattctttgat |
70 |
Q |
| |
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|||| ||||||||| |||||| ||||||||||||| ||| || ||||| ||||||||||| |
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| T |
6207817 |
tggaagaaatatttgatgaagggaataccatattgagtaagcttgaatcccattctttgat |
6207757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 6234235 - 6234175
Alignment:
| Q |
10 |
tggaggaaatatttaatgaagcgaataccatattggataaactcgaatctcattctttgat |
70 |
Q |
| |
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|||| ||||||||| |||||| ||||||||||||| ||| || ||||| ||||||||||| |
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| T |
6234235 |
tggaagaaatatttgatgaagggaataccatattgagtaagcttgaatcccattctttgat |
6234175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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