View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20149_low_5 (Length: 281)
Name: NF20149_low_5
Description: NF20149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20149_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 3 - 269
Target Start/End: Original strand, 6094082 - 6094348
Alignment:
| Q |
3 |
cttcattaaatatttcctccaatcacctattttcatttatcactccattgtcaacaatcttcaagatcaactcttttttattgcgtattgaagggctaga |
102 |
Q |
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| T |
6094082 |
cttcattaaatatttcctccaaacacctattttcatttatcactccattgtcaacaatcttcaagatcaactcttttttattgcgtattgaagggctaga |
6094181 |
T |
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| Q |
103 |
taatagtgcacaatacaaaaagcagttttgcaagtttttatcaatcaaattatcataactgcggtttaataccatgaaaacttctcccatctcatgatct |
202 |
Q |
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| T |
6094182 |
taatagtgcacaatacaaaaagcagttttgcaagtttttatcaatcaaattatcataactgcgttttaataccttgaaaacttctcccatctcatgatct |
6094281 |
T |
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| Q |
203 |
cccatttccaactgcgcaagtttattccattcatttttccactgatgaatatcatcatgctctttca |
269 |
Q |
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| T |
6094282 |
cccatttccaactgctcaagtttattccattcatttttccactgatgaatatcatcatgctctttca |
6094348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 187
Target Start/End: Original strand, 6088796 - 6088884
Alignment:
| Q |
99 |
tagataatagtgcacaatacaaaaagcagttttgcaagtttttatcaatcaaattatcataactgcggtttaataccatgaaaacttct |
187 |
Q |
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| T |
6088796 |
tagataatagtgcacaatacaaaaaacagttctgcaagtcttcttctatcaaattatcataactacgtcttaataccttgaagacttct |
6088884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 6105970 - 6106030
Alignment:
| Q |
99 |
tagataatagtgcacaatacaaaaagcagttttgcaagtttttatcaatcaaattatcata |
159 |
Q |
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| T |
6105970 |
tagataataatgcacaatacaaaaaacagttttgcaagttcttctccatcaaattatcata |
6106030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 193
Target Start/End: Original strand, 6234320 - 6234414
Alignment:
| Q |
99 |
tagataatagtgcacaatacaaaaagcagttttgcaagtttttatcaatcaaattatcataactgcggtttaataccatgaaaacttctcccatc |
193 |
Q |
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| T |
6234320 |
tagaaaataatgcgcaatacaaaaaacagttttgcaagtctttttccatcaaattatcatagctacattttaatactttgaagacttcttccatc |
6234414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 6207902 - 6207962
Alignment:
| Q |
99 |
tagataatagtgcacaatacaaaaagcagttttgcaagtttttatcaatcaaattatcata |
159 |
Q |
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| T |
6207902 |
tagaaaataatgcgcaatacaaaaaacagttttgcaagtctttttccatcaaattatcata |
6207962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 6180352 - 6180427
Alignment:
| Q |
99 |
tagataatagtgcacaatacaaaaagcagttttgcaagtttttatcaatcaaattatcataactgcggtttaatac |
174 |
Q |
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| T |
6180352 |
tagaaaataatgcgcaatacaaaaaacagttttgcatgttcttttccatcaaattatcaaaactacgttttaatac |
6180427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 6247175 - 6247248
Alignment:
| Q |
101 |
gataatagtgcacaatacaaaaagcagttttgcaagtttttatcaatcaaattatcataactgcggtttaatac |
174 |
Q |
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||||||| ||||||||||||||| || ||||||| ||| || || || ||||||||| |||| || |||||||| |
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| T |
6247175 |
gataataatgcacaatacaaaaaacaattttgcaggttcttttccattaaattatcaaaactacgttttaatac |
6247248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 6237198 - 6237258
Alignment:
| Q |
99 |
tagataatagtgcacaatacaaaaagcagttttgcaagtttttatcaatcaaattatcata |
159 |
Q |
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|||| |||| ||| ||||||||||| ||||| ||||||| ||| || |||||||||||||| |
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| T |
6237198 |
tagaaaataatgcgcaatacaaaaaacagttctgcaagtctttttccatcaaattatcata |
6237258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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