View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20149_low_6 (Length: 273)
Name: NF20149_low_6
Description: NF20149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20149_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 53042675 - 53042439
Alignment:
| Q |
15 |
cgttgtctttcagctgtaacaacacatttcctatttagtaagttgctagctacattgagttagcaatgtatttgtttggggtttgattttatcatataca |
114 |
Q |
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| T |
53042675 |
cgttgtctttcagctgtaacaacacatttcctatttagtaagttgctagctacattgagttagcaatgtatttgtttggggtttgattttattatataca |
53042576 |
T |
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| Q |
115 |
cacaacaacaacnnnnnnnnnnctagatccaaaaccccaaactctgttttctgcatttgtgattttcgcnnnnnnnnngcataatgagagaaaaatcgaa |
214 |
Q |
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| T |
53042575 |
cacaacaacaa---aaaaaaaactagatccaaaaccccaaactctgttttctgcatttgtgattttcgc--tttttttgcataatgagagaaaaatcgaa |
53042481 |
T |
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| Q |
215 |
atcaaaaggaggatgctgtggttggtttattgcgtttgtcat |
256 |
Q |
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| T |
53042480 |
atcaaaaggaggatgctgtggttggtttattgcgtttgtcat |
53042439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 7482428 - 7482472
Alignment:
| Q |
137 |
ctagatccaaaaccccaaactctgttttctgcatttgtgattttc |
181 |
Q |
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| T |
7482428 |
ctagatccaaaaccctaaactatgttttctgcatttctgactttc |
7482472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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