View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20149_low_7 (Length: 254)
Name: NF20149_low_7
Description: NF20149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20149_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 13854944 - 13854707
Alignment:
| Q |
1 |
ttttgtttttcgtatctacttgctttcgaacctgagttattggtctaacaattactaacttttcgaactctcctgtgtaatttcatcggtcctgttcagc |
100 |
Q |
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| T |
13854944 |
ttttgtttttcgtatctacttgctttcgaacctgagttattggtctaacaattactaacttttcgaactctcctgtgtaatttcatcggtcctgttcagc |
13854845 |
T |
|
| Q |
101 |
tttgagcaattttgtatcaatttgacaaatgagaagttacagcaacatttcaaccaggtttgattctttcactatctccatgtttgttgaatattattat |
200 |
Q |
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| T |
13854844 |
tttgagcaattttgtatcaatttgacaaatgagaagttacaacaacatttcaaccaggtttgattctttcactatctccatgtttgttgaatattattat |
13854745 |
T |
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| Q |
201 |
ctggtaattaatttctatacatttaattaacatttcat |
238 |
Q |
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| T |
13854744 |
ctggtaattaatttccatagattcaattaacatttcat |
13854707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 29900703 - 29900642
Alignment:
| Q |
101 |
tttgagcaattttgtatcaatttgacaaatgagaagttacagcaacatttcaaccaggtttg |
162 |
Q |
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| T |
29900703 |
tttgagcaattctgtattaatttgaccaatgaaaagctccagcaacattttaatcaggtttg |
29900642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 5 - 196
Target Start/End: Original strand, 34392017 - 34392203
Alignment:
| Q |
5 |
gtttttcgtatctacttgctttcgaacctgagttattggtctaacaattactaacttttcgaactctcctgtgtaatttcatcggtcctgttcagctttg |
104 |
Q |
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| T |
34392017 |
gtttttcgtatctgcttacttttgaacctgagtttttgttctaacaattactaacttttcaaactctcttatgta-----atcggtcctgttcagctttg |
34392111 |
T |
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| Q |
105 |
agcaattttgtatcaatttgacaaatgagaagttacagcaacatttcaaccaggtttgattctttcactatctccatgtttgttgaatatta |
196 |
Q |
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| T |
34392112 |
agcaattttgtatcaatttgacaaatgagaagttacagcaacatttcaaccaggtttgattctttcactatctccatgttcgttgaatatta |
34392203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 52153262 - 52153204
Alignment:
| Q |
101 |
tttgagcaattttgtatcaatttgacaaatgagaagttacagcaacatttcaaccaggt |
159 |
Q |
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|||||||| || ||||| ||||| |||||||||||| ||||||||||||| || ||||| |
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| T |
52153262 |
tttgagcagttctgtattaattttacaaatgagaagctacagcaacattttaatcaggt |
52153204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 39807796 - 39807854
Alignment:
| Q |
101 |
tttgagcaattttgtatcaatttgacaaatgagaagttacagcaacatttcaaccaggt |
159 |
Q |
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||||||||||||||||| |||||||||||||| ||| | ||||||||||| || ||||| |
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| T |
39807796 |
tttgagcaattttgtattaatttgacaaatgaaaagcttcagcaacattttaatcaggt |
39807854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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