View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20149_low_8 (Length: 224)

Name: NF20149_low_8
Description: NF20149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20149_low_8
NF20149_low_8
[»] chr1 (7 HSPs)
chr1 (1-211)||(13854934-13855144)
chr1 (61-202)||(12478538-12478677)
chr1 (53-126)||(34372457-34372530)
chr1 (53-200)||(31280508-31280653)
chr1 (55-94)||(16012945-16012984)
chr1 (69-202)||(33717244-33717378)
chr1 (53-125)||(28027013-28027085)
[»] chr4 (4 HSPs)
chr4 (72-211)||(34391886-34392023)
chr4 (53-154)||(29262501-29262601)
chr4 (62-120)||(2888809-2888866)
chr4 (63-149)||(4368767-4368852)
[»] chr5 (6 HSPs)
chr5 (53-159)||(6522115-6522221)
chr5 (53-124)||(38779447-38779518)
chr5 (63-121)||(10842617-10842675)
chr5 (63-121)||(33457953-33458011)
chr5 (69-159)||(40210933-40211023)
chr5 (63-127)||(38048862-38048926)
[»] chr8 (2 HSPs)
chr8 (64-211)||(11319358-11319503)
chr8 (69-121)||(2447166-2447218)
[»] chr7 (2 HSPs)
chr7 (70-129)||(34412163-34412222)
chr7 (67-123)||(24547035-24547091)
[»] chr6 (3 HSPs)
chr6 (54-159)||(9681006-9681111)
chr6 (53-129)||(24708929-24709005)
chr6 (66-122)||(29440804-29440859)
[»] chr2 (1 HSPs)
chr2 (100-129)||(2604112-2604141)


Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 13855144 - 13854934
Alignment:
Q  1 gattcttaatgtattttcttggactggtttttcttttgtgattacgtaactgttgtaaactagaccgtagtatttaaacataagttgtaatctgtatgcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13855144 gattcttaatgtattttcttggactggtttttcttttgtgattacgtaactgttgtaaactagaccgtagtatttaaacataagttgtaatctgtatgcc 13855045  T
Q  101 ctaagcttgattaatagaaaggtactgcaaccgatctgcagtcggagacttaggcacaagttgtcgaactccttgtgatcaaatctcgtgtcttctttgt 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13855044 ctaagcttgattaatagaaaggtaatgcaaccgatctgcagtcggagacttaggcacaacttgtcgaactccttgtgatcaaatctcgtgtcttctttgt 13854945  T
Q  201 ttttgtttttc 211  Q
    |||||||||||    
T  13854944 ttttgtttttc 13854934  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 61 - 202
Target Start/End: Complemental strand, 12478677 - 12478538
Alignment:
Q  61 tagaccgtagtatttaaacataagttgtaatctgtatgccctaagcttgattaatagaaaggtactgcaaccgatctgcagtcggagacttaggcacaag 160  Q
    |||||||||||||||||| | |||||||| ||| || || |||||||||||| ||| || || |||||| ||| |||||||| |||||| |||||||||     
T  12478677 tagaccgtagtatttaaatacaagttgtactctataagctctaagcttgatttataaaatggcactgcagccgctctgcagtaggagacgtaggcacaat 12478578  T
Q  161 ttgtcgaactccttgtgatcaaatctcgtgtcttctttgttt 202  Q
    | | | ||| ||  |||||||||| |||||||||||| ||||    
T  12478577 tggccaaacacc--gtgatcaaatatcgtgtcttcttcgttt 12478538  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 34372530 - 34372457
Alignment:
Q  53 ttgtaaactagaccgtagtatttaaacataagttgtaatctgtatgccctaagcttgattaatagaaaggtact 126  Q
    ||||||||| || ||||||||||||| | |||||||| | ||||  |||||||||||| |||||||| ||||||    
T  34372530 ttgtaaactggatcgtagtatttaaatacaagttgtactttgtaaaccctaagcttgaataatagaagggtact 34372457  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 200
Target Start/End: Original strand, 31280508 - 31280653
Alignment:
Q  53 ttgtaaactagaccgtagtatttaaacataagttgtaatctgtatgccctaagcttgattaatagaaaggtactgcaaccgatctgcagtcggagactta 152  Q
    ||||||| | ||||||| |||||||||| |||||| ||| ||||  |||||||||||  ||||||||||||| || | | | | || ||| |||||| ||    
T  31280508 ttgtaaaatggaccgtaatatttaaacacaagttgcaatttgtaaaccctaagcttggataatagaaaggtattgtagctgctatgtagttggagaccta 31280607  T
Q  153 ggcacaagttgtcgaactccttgtgatcaaatctcgtgtcttctttgt 200  Q
    |||| || | ||||||| ||  | |||||||||||| || ||||||||    
T  31280608 ggcataattggtcgaacacc--gagatcaaatctcgcgtgttctttgt 31280653  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 94
Target Start/End: Original strand, 16012945 - 16012984
Alignment:
Q  55 gtaaactagaccgtagtatttaaacataagttgtaatctg 94  Q
    ||||||| ||||||||||||||||||||| ||||||||||    
T  16012945 gtaaacttgaccgtagtatttaaacataacttgtaatctg 16012984  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 202
Target Start/End: Complemental strand, 33717378 - 33717244
Alignment:
Q  69 agtatttaaacataagttgtaatctgtatgccctaagcttgatta---atagaaaggtactgcaaccgatctgcagtcggagacttaggcacaagttgtc 165  Q
    ||||||| |||||||||| |||||||||  || ||||||| ||||   ||||||| |||||||| ||  |||||| ||  |||||||| ||||| | |||    
T  33717378 agtatttgaacataagttttaatctgtaaaccttaagctttattattaatagaaaagtactgcagccactctgcaatcttagacttagccacaattggtc 33717279  T
Q  166 gaactccttgtgatcaaatctcgtgtcttctttgttt 202  Q
    || |||||  ||||||||||| |||| |||| |||||    
T  33717278 gagctcct--tgatcaaatcttgtgtgttctctgttt 33717244  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 28027085 - 28027013
Alignment:
Q  53 ttgtaaactagaccgtagtatttaaacataagttgtaatctgtatgccctaagcttgattaatagaaaggtac 125  Q
    |||||||||  ||||||||||||||||| |||||||| ||  ||  |||||| ||| ||||||| ||||||||    
T  28027085 ttgtaaactgaaccgtagtatttaaacacaagttgtactcaataaaccctaatcttaattaataaaaaggtac 28027013  T

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Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 72 - 211
Target Start/End: Original strand, 34391886 - 34392023
Alignment:
Q  72 atttaaacataagttgtaatctgtatgccctaagcttgattaatagaaaggtactgcaaccgatctgcagtcggagacttaggcacaagttgtcgaactc 171  Q
    |||||||||||||||||||| ||||   ||||||||||| ||||| |||||||| ||| || ||||||| |||||||||||||||||| ||||||||||     
T  34391886 atttaaacataagttgtaatttgtaa--cctaagcttgaataataaaaaggtaccgcagccaatctgcattcggagacttaggcacaatttgtcgaactt 34391983  T
Q  172 cttgtgatcaaatctcgtgtcttctttgtttttgtttttc 211  Q
    | |||||||||||||||||||||||||||||  |||||||    
T  34391984 cgtgtgatcaaatctcgtgtcttctttgtttacgtttttc 34392023  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 29262601 - 29262501
Alignment:
Q  53 ttgtaaactagaccgtagtatttaaacataagttgtaatctgtatgccctaagcttgattaatagaaaggtactgcaaccgatctgcagtcggagactta 152  Q
    |||||||||  |||||||| || ||||| |||||||||||| ||  |||||||||||  |||||||||  |||||||||   ||||||||||||||| ||    
T  29262601 ttgtaaactgaaccgtagttttgaaacacaagttgtaatctataa-ccctaagcttggataatagaaaattactgcaactactctgcagtcggagacata 29262503  T
Q  153 gg 154  Q
    ||    
T  29262502 gg 29262501  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 2888866 - 2888809
Alignment:
Q  62 agaccgtagtatttaaacataagttgtaatctgtatgccctaagcttgattaatagaaa 120  Q
    |||||||| |||||||||| |||||||||||||||  | |||||||||| |||||||||    
T  2888866 agaccgtattatttaaacacaagttgtaatctgta-actctaagcttgaataatagaaa 2888809  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 4368852 - 4368767
Alignment:
Q  63 gaccgtagtatttaaacataagttgtaatctgtatgccctaagcttgattaatagaaaggtactgcaaccgatctgcagtcggagac 149  Q
    |||||||||||||||||| |||||||| | ||||  | |||||||||| ||||||||| | |||||||||  |||||| ||| ||||    
T  4368852 gaccgtagtatttaaacacaagttgtactttgta-cctctaagcttgaataatagaaatggactgcaaccactctgcactcgtagac 4368767  T

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Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 6522221 - 6522115
Alignment:
Q  53 ttgtaaactagaccgtagtatttaaacataagttgtaatctgtatgccctaagcttgattaatagaaaggtactgcaaccgatctgcagtcggagactta 152  Q
    |||||||||||||||||||||||||||| |||||||||| ||||   |||||| |||| ||||||||||||||| || | | ||||||||| ||||| ||    
T  6522221 ttgtaaactagaccgtagtatttaaacacaagttgtaatttgtaaatcctaagtttgaataatagaaaggtactacagctgctctgcagtctgagacgta 6522122  T
Q  153 ggcacaa 159  Q
    |||||||    
T  6522121 ggcacaa 6522115  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 38779447 - 38779518
Alignment:
Q  53 ttgtaaactagaccgtagtatttaaacataagttgtaatctgtatgccctaagcttgattaatagaaaggta 124  Q
    ||||||||| ||| |||||||||||||| |||||||| | || |  |||||||||||| |||||||||||||    
T  38779447 ttgtaaactggactgtagtatttaaacacaagttgtactatgcaaaccctaagcttgagtaatagaaaggta 38779518  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 10842675 - 10842617
Alignment:
Q  63 gaccgtagtatttaaacataagttgtaatctgtatgccctaagcttgattaatagaaag 121  Q
    |||||||||||||||||| || ||||||| ||||   ||||||||||| ||||||||||    
T  10842675 gaccgtagtatttaaacacaaattgtaatatgtaaatcctaagcttgaataatagaaag 10842617  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 33457953 - 33458011
Alignment:
Q  63 gaccgtagtatttaaacataagttgtaatctgtatgccctaagcttgattaatagaaag 121  Q
    |||||||||||||||||| ||| |||| ||| || ||| ||| ||||||||||||||||    
T  33457953 gaccgtagtatttaaacacaagctgtactctataagccataaacttgattaatagaaag 33458011  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 159
Target Start/End: Complemental strand, 40211023 - 40210933
Alignment:
Q  69 agtatttaaacataagttgtaatctgtatgccctaagcttgattaatagaaaggtactgcaaccgatctgcagtcggagacttaggcacaa 159  Q
    |||||||| ||| ||| |||||| ||||  |||||||||||| |||||||||| || || ||||  ||||| || |||||| |||||||||    
T  40211023 agtatttatacacaagctgtaatatgtaaaccctaagcttgaataatagaaagatattgtaaccactctgcggttggagacataggcacaa 40210933  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 38048862 - 38048926
Alignment:
Q  63 gaccgtagtatttaaacataagttgtaatctgtatgccctaagcttgattaatagaaaggtactg 127  Q
    |||| ||||||||||||| |||||||||||||||  | || | ||||| ||||||||| ||||||    
T  38048862 gaccatagtatttaaacacaagttgtaatctgtaaactcttaacttgaataatagaaatgtactg 38048926  T

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Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 64 - 211
Target Start/End: Original strand, 11319358 - 11319503
Alignment:
Q  64 accgtagtatttaaacataagttgtaatctgtatgccctaagcttgattaatagaaaggtactgcaaccgatctgcagtcggagacttaggcacaagttg 163  Q
    ||||| |||||||| || |||||||||||||||  | |||||||||| ||||||||||||||| |  |||  ||| ||| |||| | ||||||||| | |    
T  11319358 accgtcgtatttaagcacaagttgtaatctgtaaactctaagcttgaataatagaaaggtactaccgccgccctgtagttggaggcgtaggcacaattag 11319457  T
Q  164 tcgaactccttgtgatcaaatctcgtgtcttctttgtttttgtttttc 211  Q
      |||||||  ||||||||||||||||| ||||||| || ||||||||    
T  11319458 ctgaactcc--gtgatcaaatctcgtgtgttctttgcttgtgtttttc 11319503  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 2447166 - 2447218
Alignment:
Q  69 agtatttaaacataagttgtaatctgtatgccctaagcttgattaatagaaag 121  Q
    ||||||||||||||||||||| | ||||  || ||||||||||||||||||||    
T  2447166 agtatttaaacataagttgtactttgtaaaccttaagcttgattaatagaaag 2447218  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 34412222 - 34412163
Alignment:
Q  70 gtatttaaacataagttgtaatctgtatgccctaagcttgattaatagaaaggtactgca 129  Q
    ||||||||||| || ||||||||||||  |||||||||||| ||||||||||||| ||||    
T  34412222 gtatttaaacacaaattgtaatctgtaaaccctaagcttgaataatagaaaggtattgca 34412163  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 24547091 - 24547035
Alignment:
Q  67 gtagtatttaaacataagttgtaatctgtatgccctaagcttgattaatagaaaggt 123  Q
    |||||||||||||| |||||||| | | ||  |||||||||||||||||||||||||    
T  24547091 gtagtatttaaacacaagttgtactttataaaccctaagcttgattaatagaaaggt 24547035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 9681006 - 9681111
Alignment:
Q  54 tgtaaactagaccgtagtatttaaacataagttgtaatctgtatgccctaagcttgattaatagaaaggtactgcaaccgatctgcagtcggagacttag 153  Q
    |||||||| ||||||| |||||||| | |||||||||||| ||  ||||||| ||  |||||||||||||| ||||   | ||||||||| ||||| ||     
T  9681006 tgtaaactggaccgtaatatttaaatacaagttgtaatctataaaccctaagtttagttaatagaaaggtaatgcagttgctctgcagtcagagacgtat 9681105  T
Q  154 gcacaa 159  Q
    ||||||    
T  9681106 gcacaa 9681111  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 24708929 - 24709005
Alignment:
Q  53 ttgtaaactagaccgtagtatttaaacataagttgtaatctgtatgccctaagcttgattaatagaaaggtactgca 129  Q
    |||||||| | ||| |||||||| || | |||||||| ||| ||  ||||||||||||||| |||||||||| ||||    
T  24708929 ttgtaaaccaaaccttagtatttgaatacaagttgtattctataaaccctaagcttgattattagaaaggtattgca 24709005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 29440859 - 29440804
Alignment:
Q  66 cgtagtatttaaacataagttgtaatctgtatgccctaagcttgattaatagaaagg 122  Q
    |||||||||||||| || |||||||||||||  ||||||| |||| |||||||||||    
T  29440859 cgtagtatttaaacttatgttgtaatctgta-accctaagtttgaataatagaaagg 29440804  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 2604141 - 2604112
Alignment:
Q  100 cctaagcttgattaatagaaaggtactgca 129  Q
    ||||||||||||||||||||||||||||||    
T  2604141 cctaagcttgattaatagaaaggtactgca 2604112  T

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