View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_high_11 (Length: 488)
Name: NF2014_high_11
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 295 - 472
Target Start/End: Original strand, 2339944 - 2340121
Alignment:
| Q |
295 |
aaaataaataacacttatatgtattgacctcaaccatgagtttaaataatagttaccataatacttgcagtcgttttattatcatcaaattgtggtgaca |
394 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
2339944 |
aaaataaataacacttctatgtattgacctcaaccatgagtttaaataatagttaccataacacttgcagtcgtttcattatcatcaaattgtggtgaca |
2340043 |
T |
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| Q |
395 |
tacatttatcttaaacaatgatctctatttaagaatgttaannnnnnngtacacatgcatcaaaatcttgaccccacc |
472 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2340044 |
tatatttatcttaaacaatgatctctatttaagaatgttaatttttttgtacacatgcatcaaaatcttgaccccacc |
2340121 |
T |
|
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 298
Target Start/End: Complemental strand, 9809716 - 9809669
Alignment:
| Q |
251 |
ttatatatgtaaattttcaatgattattatcattttgtttatctaaaa |
298 |
Q |
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||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
9809716 |
ttatatatgtaaatttttaatgattattatcatttcgtttatctaaaa |
9809669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 295
Target Start/End: Original strand, 3237122 - 3237155
Alignment:
| Q |
262 |
aattttcaatgattattatcattttgtttatcta |
295 |
Q |
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| T |
3237122 |
aattttcaataattattatcattttgtttatcta |
3237155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 43503325 - 43503281
Alignment:
| Q |
254 |
tatatgtaaattttcaatgattattatcattttgtttatctaaaa |
298 |
Q |
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|||||||||||||||||| |||||| | ||||||| ||||||||| |
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| T |
43503325 |
tatatgtaaattttcaataattattgtgattttgtctatctaaaa |
43503281 |
T |
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