View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_high_111 (Length: 219)
Name: NF2014_high_111
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_high_111 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 200
Target Start/End: Complemental strand, 45924525 - 45924337
Alignment:
| Q |
12 |
gataatactgataacaagaccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtg |
111 |
Q |
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| T |
45924525 |
gataattctgataacaagaccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtg |
45924426 |
T |
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| Q |
112 |
ttgagtgtttcaccttctcccacaacatatatctcatcacatgctttgtgatcaccaaggctattccctctaacttgtaattcagccac |
200 |
Q |
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| T |
45924425 |
ttgagtgtttcaccttctcccacaacatatatctcatcacatgctttgtgatcaccaaggctattccctctaacttgtaattcagccac |
45924337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 162
Target Start/End: Complemental strand, 45936473 - 45936323
Alignment:
| Q |
12 |
gataatactgataacaagaccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtg |
111 |
Q |
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| T |
45936473 |
gataattctgataacaagaccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtg |
45936374 |
T |
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| Q |
112 |
ttgagtgtttcaccttctcccacaacatatatctcatcacatgctttgtga |
162 |
Q |
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| T |
45936373 |
ttgagtgtttcaccttctcccacaacatatatctcatcacatgctttgtga |
45936323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 26303329 - 26303197
Alignment:
| Q |
20 |
tgataacaagaccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtgttgagtgt |
119 |
Q |
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| T |
26303329 |
tgataacaaggccagggaaaacatcatcaggatcatgaatatgtggattctcttcaacaatataaggatcaccacacttttcacttattgtttgaagtgt |
26303230 |
T |
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| Q |
120 |
ttcaccttctcccacaacatatatctcatcaca |
152 |
Q |
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|| || || || ||||| |||||||||||||| |
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| T |
26303229 |
ctctccctcgccaacaacgtatatctcatcaca |
26303197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 42240150 - 42240290
Alignment:
| Q |
20 |
tgataacaagaccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtgttgagtgt |
119 |
Q |
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||||||||||||| || |||||||||||||| ||||| |||||||||||| ||||||||||| || |||||||| |||||||| ||||| | || || |
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| T |
42240150 |
tgataacaagacctggaaaaacatcatctgggtcatgaatatgtggattctcttctacaataaatggatcaccacatttttcacttattgtatgaagagt |
42240249 |
T |
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| Q |
120 |
ttcaccttctcccacaacatatatctcatcacatgctttgt |
160 |
Q |
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| T |
42240250 |
ctctccttcacgaaccacatatatctcatcacacgctttgt |
42240290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 12631272 - 12631380
Alignment:
| Q |
20 |
tgataacaagaccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtgttgagtgt |
119 |
Q |
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||||||||||||||||||| |||||||| || ||||| ||||| ||||| |||| |||||||| || ||| |||||| ||||| |||||||| ||||| |
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| T |
12631272 |
tgataacaagaccagggaagacatcatcagggtcatgaatatgaggattattctcaacaataaaaggatcattacacttatcactaattgtgttaagtgt |
12631371 |
T |
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| Q |
120 |
ttcaccttc |
128 |
Q |
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|||||||| |
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| T |
12631372 |
ctcaccttc |
12631380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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