View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_high_112 (Length: 219)
Name: NF2014_high_112
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_high_112 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 50394562 - 50394379
Alignment:
| Q |
18 |
aagaggacactagtaatccagagttcggttgggggtaagtnnnnnnncttgtcaatcaaactcaagttctcctagacaattcttcatttggtgaagctca |
117 |
Q |
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| T |
50394562 |
aagaggacactagtaatc--gagttcggttgggggtaagtaaaaaaacttgtcaatcaaactcaagttctcctagacaattcttcatttggtgaagctca |
50394465 |
T |
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| Q |
118 |
ttagccatttgaacccaattggtagttagtctcataaaatttgcatcttagcttgaaaattatacaatattattaaggaaaatatt |
203 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50394464 |
ttagccatttgaacccaattgctagttagtctcataaaatttgcatcttagcttgaaaattatacaatattattaaggaaaatatt |
50394379 |
T |
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