View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2014_high_113 (Length: 215)

Name: NF2014_high_113
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2014_high_113
NF2014_high_113
[»] chr4 (6 HSPs)
chr4 (16-197)||(2664722-2664904)
chr4 (16-198)||(42883543-42883725)
chr4 (16-161)||(52648228-52648374)
chr4 (59-198)||(14461659-14461799)
chr4 (106-196)||(9474980-9475070)
chr4 (35-101)||(9474891-9474957)
[»] scaffold0129 (1 HSPs)
scaffold0129 (16-198)||(7473-7656)
[»] chr5 (5 HSPs)
chr5 (16-198)||(23120918-23121102)
chr5 (16-198)||(28313401-28313584)
chr5 (16-198)||(14009588-14009772)
chr5 (16-58)||(12036706-12036748)
chr5 (16-58)||(19321199-19321241)
[»] chr3 (3 HSPs)
chr3 (16-198)||(22509521-22509705)
chr3 (16-198)||(39703087-39703269)
chr3 (16-198)||(39622037-39622220)
[»] chr8 (1 HSPs)
chr8 (16-198)||(12868247-12868431)
[»] chr7 (5 HSPs)
chr7 (16-198)||(41596738-41596922)
chr7 (24-198)||(33532109-33532281)
chr7 (16-137)||(17174754-17174876)
chr7 (16-94)||(42452979-42453057)
chr7 (16-64)||(21525603-21525651)
[»] chr2 (5 HSPs)
chr2 (16-198)||(43525344-43525528)
chr2 (24-198)||(12054971-12055146)
chr2 (20-101)||(37551708-37551789)
chr2 (27-161)||(40355305-40355442)
chr2 (22-87)||(29893400-29893465)
[»] scaffold0711 (1 HSPs)
scaffold0711 (16-184)||(1-171)
[»] chr6 (4 HSPs)
chr6 (24-198)||(15667034-15667208)
chr6 (16-137)||(17912153-17912275)
chr6 (16-104)||(20431556-20431643)
chr6 (154-194)||(20431698-20431738)
[»] chr1 (3 HSPs)
chr1 (36-198)||(20256317-20256479)
chr1 (24-122)||(44316042-44316141)
chr1 (16-58)||(42677972-42678014)


Alignment Details
Target: chr4 (Bit Score: 139; Significance: 6e-73; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 2664722 - 2664904
Alignment:
Q  16 aatatcgagggtgggccaccaaaatatactctaatatataaacataaatttttcaattgtaataaacgctaatcacaaagtttcatcaacaa-gtaaact 114  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||| || |||||||    
T  2664722 aatatcgagggtgggccagcaaaatatactctaatatataaacataaatttttcagttgtaatagacgctaagcacaaagtttcatcaaaaaagtaaact 2664821  T
Q  115 acataccttagaaaatttaaataagtcgttacgtgattcaactaactagaaatcatcaattactaactcataactaatacttg 197  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||| ||||||||||||||||||||||    
T  2664822 acataccttagaaaatttaaataagtcgttacgcgatccaactaacttgaaatcatcaataactaactcataactaatacttg 2664904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 42883543 - 42883725
Alignment:
Q  16 aatatcgagggtgggccaccaaaatatactctaatatataaacataaatttttcaattgtaataaacgctaatcacaaagtttcatcaacaagtaaacta 115  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||| |||| | |||||||||||||||| |||||||||||||||| ||||||| ||    
T  42883543 aatatcgagggtgggccaacaaaatatactctaatatatgaacataaactttttagttgtaataaacgctaagcacaaagtttcatcaaaaagtaaagta 42883642  T
Q  116 cataccttagaaaatttaaataagtcgttacgtgattcaactaactagaaatcatcaattactaactcataactaatacttgc 198  Q
    ||||| |||||||||| ||||||||||||| | ||| ||||||||| ||||| |||||| ||||||||| |||||||| ||||    
T  42883643 catactttagaaaattaaaataagtcgttatgcgatccaactaacttgaaattatcaataactaactcagaactaatatttgc 42883725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 52648228 - 52648374
Alignment:
Q  16 aatatcgagggtgggccaccaaaatatactctaatatataaacataaatttttcaattgtaataaacgctaatcacaaagtttcatc-aacaagtaaact 114  Q
    |||||||||| ||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| || |||||||||    
T  52648228 aatatcgaggatgggctagcaaaatatactctaatatataaacataaatttttcagttgtaataaacgctaagcacaaagtttcatcaaaaaagtaaact 52648327  T
Q  115 acataccttagaaaatttaaataagtcgttacgtgattcaactaact 161  Q
    ||||||||||||||||| |||||| | ||||||| || |||||||||    
T  52648328 acataccttagaaaattaaaataattggttacgtaatccaactaact 52648374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 59 - 198
Target Start/End: Complemental strand, 14461799 - 14461659
Alignment:
Q  59 ataaatttttcaattgtaataaacgctaatcacaaagtttcatcaacaa-gtaaactacataccttagaaaatttaaataagtcgttacgtgattcaact 157  Q
    |||||||||||| |||||||||||||||| ||||||||||  |||| || |||||||| |||| |||||||||| ||||||||||||||| ||| |||||    
T  14461799 ataaatttttcagttgtaataaacgctaagcacaaagtttagtcaaaaaagtaaactatatactttagaaaattaaaataagtcgttacgcgatccaact 14461700  T
Q  158 aactagaaatcatcaattactaactcataactaatacttgc 198  Q
    |||| |||||||||||| ||| ||||| |||||||||||||    
T  14461699 aacttgaaatcatcaataactgactcagaactaatacttgc 14461659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 9474980 - 9475070
Alignment:
Q  106 aagtaaactacataccttagaaaatttaaataagtcgttacgtgattcaactaactagaaatcatcaattactaactcataactaatactt 196  Q
    |||||||||| | ||||||||||||| |||||||||||| |  ||| ||||||||| |||||||||||| ||||| ||| |||||||||||    
T  9474980 aagtaaactataaaccttagaaaattaaaataagtcgttgcacgatccaactaacttgaaatcatcaataactaattcaaaactaatactt 9475070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 9474891 - 9474957
Alignment:
Q  35 caaaatatactctaatatataaacataaatttttcaattgtaataaacgctaatcacaaagtttcat 101  Q
    ||||||||| | ||||||||||  ||||| |||||  |||||||||||||||| |||||||||||||    
T  9474891 caaaatatattttaatatataattataaacttttctgttgtaataaacgctaaacacaaagtttcat 9474957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 7473 - 7656
Alignment:
Q  16 aatatcgagggtgggccaccaaaatatactctaatatataaacataaatttttcaattgtaataaacgctaatcacaaagtttcatc-aacaagtaaact 114  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||| || |||||||||    
T  7473 aatatcgagggtgggccagcaaaatatactataatatataaacataaatttttcagttgtaataaacgctaagcacaaagtttcatcaaaaaagtaaact 7572  T
Q  115 acataccttagaaaatttaaataagtcgttacgtgattcaactaactagaaatcatcaattactaactcataactaatacttgc 198  Q
    ||||||| ||||||||| ||||||||||||||  ||| ||||||| | | |||||||||| |||||||||||||||||||||||    
T  7573 acataccatagaaaattaaaataagtcgttacacgatccaactaagttgtaatcatcaataactaactcataactaatacttgc 7656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 23120918 - 23121102
Alignment:
Q  16 aatatcgagggtgggccaccaaaatatactctaatatataaa-cataaatttttcaattgtaataaacgctaatcacaaagtttcatcaacaa-gtaaac 113  Q
    ||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||| |||| |||||||||| ||||| || ||||||    
T  23120918 aatatcgggggtgggccagcaaaatatactctaatatataaaacataaatttttcagttgtaataaactctaagcacaaagtttaatcaaaaaagtaaac 23121017  T
Q  114 tacataccttagaaaatttaaataagtcgttacgtgattcaactaactagaaatcatcaattactaactcataactaatacttgc 198  Q
    |||||||||||||||||| ||||||||||||||| ||| ||||||||| |||||||||||| ||| ||||| |||||||||||||    
T  23121018 tacataccttagaaaattaaaataagtcgttacgcgatccaactaacttgaaatcatcaataactgactcagaactaatacttgc 23121102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 28313584 - 28313401
Alignment:
Q  16 aatatcgagggtgggccaccaaaatatactctaatatataaacataaatttttcaattgtaataaacgctaatcacaaagtttcatcaacaa-gtaaact 114  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||   |||||||||||| ||| |||| ||||||||||| || | |||||    
T  28313584 aatatcgggggtgggccagcaaaatatactctaatatataaacataaatttttttgttgtaataaacgttaaacacagagtttcatcaaaaaagaaaact 28313485  T
Q  115 acataccttagaaaatttaaataagtcgttacgtgattcaactaactagaaatcatcaattactaactcataactaatacttgc 198  Q
    ||||||||||||||||| ||||||||||||||||||| ||| ||||| |||||||||||| ||||||||| |||||||||||||    
T  28313484 acataccttagaaaattaaaataagtcgttacgtgatccaattaacttgaaatcatcaataactaactcagaactaatacttgc 28313401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 14009772 - 14009588
Alignment:
Q  16 aatatcgagggtgggccaccaaaatatactctaatatataaac-ataaatttttcaattgtaataaacgctaatcacaaagtttcatcaacaa-gtaaac 113  Q
    ||||||| |||||||||| |||||||||||||||||||||||  |||||||||||| ||| |||||||||||| |||||||||| ||||| || ||||||    
T  14009772 aatatcgggggtgggccaacaaaatatactctaatatataaaatataaatttttcagttgaaataaacgctaagcacaaagtttaatcaaaaaagtaaac 14009673  T
Q  114 tacataccttagaaaatttaaataagtcgttacgtgattcaactaactagaaatcatcaattactaactcataactaatacttgc 198  Q
    |||||||||||| ||||| ||||||||||||||| ||| ||||||||| |||||||||||| ||| |||||||||||||||||||    
T  14009672 tacataccttaggaaattaaaataagtcgttacgcgatccaactaacttgaaatcatcaataactgactcataactaatacttgc 14009588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 12036748 - 12036706
Alignment:
Q  16 aatatcgagggtgggccaccaaaatatactctaatatataaac 58  Q
    |||||||||||||| ||| |||| |||||||||||||||||||    
T  12036748 aatatcgagggtggaccagcaaattatactctaatatataaac 12036706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 19321241 - 19321199
Alignment:
Q  16 aatatcgagggtgggccaccaaaatatactctaatatataaac 58  Q
    |||||||||||||||||| |||| |||||| ||||||||||||    
T  19321241 aatatcgagggtgggccagcaaattatactataatatataaac 19321199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 22509521 - 22509705
Alignment:
Q  16 aatatcgagggtgggccaccaaaatatactctaatatataaa-cataaatttttcaattgtaataaacgctaatcacaaagtttcatcaacaa-gtaaac 113  Q
    ||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||| || ||||||||||||| |||||||||| ||||| || ||||||    
T  22509521 aatatcgggggtgggccagcaaaatatactctaatatataaaacataaatttttcagttataataaacgctaagcacaaagtttaatcaaaaaagtaaac 22509620  T
Q  114 tacataccttagaaaatttaaataagtcgttacgtgattcaactaactagaaatcatcaattactaactcataactaatacttgc 198  Q
    |||||||||||||||||| ||||||||||||||| ||| ||||||||| |||||||||||| ||| ||||| |||||||||||||    
T  22509621 tacataccttagaaaattaaaataagtcgttacgcgatccaactaacttgaaatcatcaataactgactcagaactaatacttgc 22509705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 39703269 - 39703087
Alignment:
Q  16 aatatcgagggtgggccaccaaaatatactctaatatataaacataaatttttcaattgtaataaacgctaatcacaaagtttcatcaacaagtaaacta 115  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||| |||||| |||||||||||||||| || ||||||||||||| ||||||||||    
T  39703269 aatatcgagggtgggctaacaaaatatactctaatatataaacataaacttttcagttgtaataaacgctaaacataaagtttcatcaaaaagtaaacta 39703170  T
Q  116 cataccttagaaaatttaaataagtcgttacgtgattcaactaactagaaatcatcaattactaactcataactaatacttgc 198  Q
    |||||||||||||||| ||||||||| ||| | ||| |||||||||  |||| |||||| ||||||||| |||||||| ||||    
T  39703169 cataccttagaaaattaaaataagtcattatgcgatccaactaactttaaattatcaataactaactcagaactaatatttgc 39703087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 39622220 - 39622037
Alignment:
Q  16 aatatcgagggtgggccaccaaaatatactctaatatataaacataaatttttcaattgtaataaacgctaatcacaaagtttcatcaacaa-gtaaact 114  Q
    |||||||  ||||||| | |||||||||||||||||||||| ||||| ||||||  |||||||||||||||| |||||||||||||||| || |||||||    
T  39622220 aatatcggaggtgggcaagcaaaatatactctaatatataagcataattttttctgttgtaataaacgctaagcacaaagtttcatcaaaaaagtaaact 39622121  T
Q  115 acataccttagaaaatttaaataagtcgttacgtgattcaactaactagaaatcatcaattactaactcataactaatacttgc 198  Q
    |||||||||| |||||| ||||||||||||||  ||| ||||||| | |||||||||||| ||||| ||| |||||||||||||    
T  39622120 acataccttaaaaaattaaaataagtcgttacacgatccaactaatttgaaatcatcaataactaattcagaactaatacttgc 39622037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 12868247 - 12868431
Alignment:
Q  16 aatatcgagggtgggccaccaaaatatactctaatatataaac-ataaatttttcaattgtaataaacgctaatcacaaagtttcatcaacaa-gtaaac 113  Q
    ||||||| |||||||||| |||||||||||||||||||||||  |||||||||||| ||| |||||||||||| |||||||||| ||||| || ||||||    
T  12868247 aatatcgggggtgggccaacaaaatatactctaatatataaaatataaatttttcagttgaaataaacgctaagcacaaagtttaatcaaaaaagtaaac 12868346  T
Q  114 tacataccttagaaaatttaaataagtcgttacgtgattcaactaactagaaatcatcaattactaactcataactaatacttgc 198  Q
    |||||||||||| ||||| ||||||||||||||||||| ||||||||| |||||||||||| ||| ||||| |||||||||||||    
T  12868347 tacataccttaggaaattaaaataagtcgttacgtgatccaactaacttgaaatcatcaataactgactcagaactaatacttgc 12868431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 41596922 - 41596738
Alignment:
Q  16 aatatcgagggtgggccaccaaaatatactctaatatataaac-ataaatttttcaattgtaataaacgctaatcacaaagtttcatcaacaa-gtaaac 113  Q
    ||||||| |||||||||| |||||||||||||||||||||||  |||||||||||| ||| |||||||||||| |||||||||| ||||| || ||||||    
T  41596922 aatatcgggggtgggccaacaaaatatactctaatatataaaatataaatttttcagttgaaataaacgctaagcacaaagtttaatcaaaaaagtaaac 41596823  T
Q  114 tacataccttagaaaatttaaataagtcgttacgtgattcaactaactagaaatcatcaattactaactcataactaatacttgc 198  Q
    |||||||||||| ||||| ||||||||||||||| ||| ||||||||| |||||||||||| ||| ||||| |||||||||||||    
T  41596822 tacataccttaggaaattaaaataagtcgttacgcgatccaactaacttgaaatcatcaataactgactcagaactaatacttgc 41596738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 24 - 198
Target Start/End: Complemental strand, 33532281 - 33532109
Alignment:
Q  24 gggtgggccaccaaaatatactctaatatataaacataaatttttcaattgtaataaacgctaatcacaaagtttcatc-aacaagtaaactacatacct 122  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||| || |||||||||||||||||    
T  33532281 gggtgggccaacaaaacatactctaatatataaacataaatttttctcttgtaataaacgctaagcacaaagtttcatcaaaaaagtaaactacatacct 33532182  T
Q  123 tagaaaatttaaataagtcgttacgtgattcaactaactagaaatcatcaattactaactcataactaatacttgc 198  Q
    ||||||||| |||||||||||||||  || ||   |||| ||||| || ||| ||||||||| |||||||||||||    
T  33532181 tagaaaattaaaataagtcgttacgcaatcca---aacttgaaataattaataactaactcagaactaatacttgc 33532109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 17174754 - 17174876
Alignment:
Q  16 aatatcgagggtgggccaccaaaatatactctaatatataaacataaatttttcaattgtaataaacgctaatcacaaagtttcat-caacaagtaaact 114  Q
    ||||| ||||||||||||  ||||||||| |||||||||||||||||| ||||||  ||||||||||||||| |||||||||||||  || |||||||||    
T  17174754 aatattgagggtgggccagtaaaatataccctaatatataaacataaacttttcatatgtaataaacgctaagcacaaagtttcataaaaaaagtaaact 17174853  T
Q  115 acataccttagaaaatttaaata 137  Q
    |||||| |||||||||| |||||    
T  17174854 acatactttagaaaattaaaata 17174876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 42453057 - 42452979
Alignment:
Q  16 aatatcgagggtgggccaccaaaatatactctaatatataaacataaatttttcaattgtaataaacgctaatcacaaa 94  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||| || |||| |||||||||||||||| ||||||    
T  42453057 aatatcgagggtgggccaacaaaatatactctaatatgtaaacataatttattcagttgtaataaacgctaagcacaaa 42452979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 21525603 - 21525651
Alignment:
Q  16 aatatcgagggtgggccaccaaaatatactctaatatataaacataaat 64  Q
    ||||||||||||| |||| ||||||||||||||||||||||||| ||||    
T  21525603 aatatcgagggtgtgccagcaaaatatactctaatatataaacaaaaat 21525651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 43525528 - 43525344
Alignment:
Q  16 aatatcgagggtgggccaccaaaatatactctaatatataaac-ataaatttttcaattgtaataaacgctaatcacaaagtttcatcaacaa-gtaaac 113  Q
    ||||||| |||||||||| |||||||||||||||||||||||  |||||||||||| ||| |||||||||||| |||||||||| ||||| || ||||||    
T  43525528 aatatcgggggtgggccaacaaaatatactctaatatataaaatataaatttttcagttgaaataaacgctaagcacaaagtttaatcaaaaaagtaaac 43525429  T
Q  114 tacataccttagaaaatttaaataagtcgttacgtgattcaactaactagaaatcatcaattactaactcataactaatacttgc 198  Q
    |||||||||||| ||||| ||||||||||||||| ||| ||||||||| |||||||||||| ||| ||||| |||||||||||||    
T  43525428 tacataccttaggaaattaaaataagtcgttacgcgatccaactaacttgaaatcatcaataactgactcagaactaatacttgc 43525344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 198
Target Start/End: Original strand, 12054971 - 12055146
Alignment:
Q  24 gggtgggccaccaaaatatactctaatatataaacataaatttttcaattgtaataaacgctaatcacaaagtttcatcaaca-agtaaactacatacct 122  Q
    |||||||||| ||||||||||||  |||||||||||||||||| ||  ||||||||||||| || |||||||||||||||| | ||||||||||||||||    
T  12054971 gggtgggccagcaaaatatactcggatatataaacataaatttgtctgttgtaataaacgccaaacacaaagtttcatcaaaatagtaaactacatacct 12055070  T
Q  123 tagaaaatttaaataagtcgttacgtgattcaactaactagaaatcatcaattactaactcataactaatacttgc 198  Q
    ||||||||| |||||| |||||| | ||| ||||||||| |||||||||||| || ||||||||||||||||||||    
T  12055071 tagaaaattaaaataattcgttatgcgatccaactaacttgaaatcatcaatgaccaactcataactaatacttgc 12055146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 37551708 - 37551789
Alignment:
Q  20 tcgagggtgggccaccaaaatatactctaatatataaacataaatttttcaattgtaataaacgctaatcacaaagtttcat 101  Q
    |||||| ||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  37551708 tcgaggatggaccaacaaaatatactctaatatataaacataaatttttcagttgtaataaacgctaagcacaaagtttcat 37551789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 161
Target Start/End: Original strand, 40355305 - 40355442
Alignment:
Q  27 tgggccaccaaaatatactctaatatataaacataaatttttcaattgtaataaacgctaatcacaaagtttcatcaacaagtaaa------ctacatac 120  Q
    |||||||  |||||| ||| |||||||||||||||| ||||| | ||||||||||| ||||  |||||||||||| || ||  |||      ||||||||    
T  40355305 tgggccagtaaaataaactttaatatataaacataatttttt-agttgtaataaacactaa--acaaagtttcataaaaaaaaaaaaaaaacctacatac 40355401  T
Q  121 cttagaaaatttaaataagtcgttacgtgattcaactaact 161  Q
    ||||||||||| |||||| || ||||| ||| |||||||||    
T  40355402 cttagaaaattaaaataaatcattacgcgatccaactaact 40355442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 29893400 - 29893465
Alignment:
Q  22 gagggtgggccaccaaaatatactctaatatataaacataaatttttcaattgtaataaacgctaa 87  Q
    |||||||  ||| ||||||||||| ||||| ||||| | | |||||||||||||||| ||||||||    
T  29893400 gagggtgaaccaacaaaatatactataataaataaataaatatttttcaattgtaatgaacgctaa 29893465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 171 - 1
Alignment:
Q  16 aatatcgagggtgggccaccaaaatatactctaatatataaac-ataaatttttcaattgtaataaacgctaatcacaaagtttcatcaacaa-gtaaac 113  Q
    ||||||| || ||||||| |||||||||||||||||||||||  |||||||||||| ||| |||||||||||| |||||||||| ||||| || ||||||    
T  171 aatatcggggttgggccaacaaaatatactctaatatataaaatataaatttttcagttgaaataaacgctaagcacaaagtttaatcaaaaaagtaaac 72  T
Q  114 tacataccttagaaaatttaaataagtcgttacgtgattcaactaactagaaatcatcaattactaactca 184  Q
    |||||||||||| ||||| ||||||||||||||| ||| ||||||||| |||||||||||| ||| |||||    
T  71 tacataccttaggaaattaaaataagtcgttacgcgatccaactaacttgaaatcatcaataactgactca 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 4e-40; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 24 - 198
Target Start/End: Original strand, 15667034 - 15667208
Alignment:
Q  24 gggtgggccaccaaaatatactctaatatataaacataaatttttcaattgtaataaacgctaatcacaaagtttcatc-aacaagtaaactacatacct 122  Q
    |||||| ||| ||||||||||||||||||||||||||| |||||||  |||||||||| ||||| ||||| |||||||| || |||||||||||||||||    
T  15667034 gggtggaccagcaaaatatactctaatatataaacatacatttttctgttgtaataaatgctaagcacaacgtttcatcaaaaaagtaaactacatacct 15667133  T
Q  123 tagaaaatttaaataagtcgttacgtgattcaactaactagaaatcatcaattactaactcataactaatacttgc 198  Q
    || |||||| ||||||||  ||| | ||| ||||||||| ||||||||||| || ||||||| |||||||||||||    
T  15667134 taaaaaattaaaataagtttttatgcgatccaactaacttgaaatcatcaa-taataactcagaactaatacttgc 15667208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 17912153 - 17912275
Alignment:
Q  16 aatatcgagggtgggccaccaaaatatactctaatatataaacataaatttttcaattgtaataaacgctaatcacaaagtttcat-caacaagtaaact 114  Q
    ||||||||||||||||||  |||||||| | ||||||||||| ||||| ||||||  |||||||||||||||||||||||||||||  || |||||||||    
T  17912153 aatatcgagggtgggccagtaaaatatattgtaatatataaatataaacttttcatatgtaataaacgctaatcacaaagtttcataaaaaaagtaaact 17912252  T
Q  115 acataccttagaaaatttaaata 137  Q
    |||||| ||| |||||| |||||    
T  17912253 acatactttataaaattaaaata 17912275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 20431556 - 20431643
Alignment:
Q  16 aatatcgagggtgggccaccaaaatatactctaatatataaacataaatttttcaattgtaataaacgctaatcacaaagtttcatcaa 104  Q
    ||||||| |||||| ||| |||||||||||||||||||||||||||||  |||   |||||||||||||||| ||||||||||||||||    
T  20431556 aatatcgtgggtggaccagcaaaatatactctaatatataaacataaa-ctttatgttgtaataaacgctaaacacaaagtttcatcaa 20431643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 20431698 - 20431738
Alignment:
Q  154 aactaactagaaatcatcaattactaactcataactaatac 194  Q
    |||||||| |||||||||||||||||||||| |||||||||    
T  20431698 aactaacttgaaatcatcaattactaactcaaaactaatac 20431738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 6e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 36 - 198
Target Start/End: Original strand, 20256317 - 20256479
Alignment:
Q  36 aaaatatactctaatatataaacataaatttttcaattgtaataaacgctaatcacaaagtttcatcaacaagt-aaactacataccttagaaaatttaa 134  Q
    |||||| ||||||||||||||||||||||||||   |||||||||||||||| |||||| ||||||||| || | ||||||||||||||| |||||| ||    
T  20256317 aaaataaactctaatatataaacataaattttttg-ttgtaataaacgctaaacacaaaatttcatcaaaaaattaaactacataccttaaaaaattaaa 20256415  T
Q  135 ataagtcgttacgtgattcaactaactagaaatcatcaattactaactcataactaatacttgc 198  Q
    |||| |  ||||| |||  ||||||||  ||||||||||| ||||||||| |||||||||||||    
T  20256416 ataattatttacgcgatctaactaacttaaaatcatcaataactaactcaaaactaatacttgc 20256479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 44316042 - 44316141
Alignment:
Q  24 gggtgggccaccaaaatatactctaatatataaacataaatttttcaattgtaataaacgctaatcacaaagtttcatc-aacaagtaaactacatacct 122  Q
    |||||||||  ||||||||||||||||||||||||||||| |||||  |||||||||||||||| |||||||||||||| || |||||||||||||||||    
T  44316042 gggtgggcctacaaaatatactctaatatataaacataaacttttctgttgtaataaacgctaaacacaaagtttcatcaaaaaagtaaactacatacct 44316141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 42678014 - 42677972
Alignment:
Q  16 aatatcgagggtgggccaccaaaatatactctaatatataaac 58  Q
    |||||||||||||||| | |||| |||||||||||||||||||    
T  42678014 aatatcgagggtgggctagcaaattatactctaatatataaac 42677972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University