View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_high_12 (Length: 478)
Name: NF2014_high_12
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 13 - 464
Target Start/End: Original strand, 2787458 - 2787909
Alignment:
| Q |
13 |
aaaatcttgaaaccctaccttgtatttgtcgtcgttaggaaccaaaacagcaagtcctggtttaaaaacggataaccctttcggggtaacaaaaccgtag |
112 |
Q |
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| T |
2787458 |
aaaatcttgaaaccctaccttgtatttgtcgtcgttaggaaccaaaacagcaagtcctggtttaaaaacggataaccctttcggggtaacaaaaccatag |
2787557 |
T |
|
| Q |
113 |
taaacgttaccatcagcgccgtgaaaactatctgtaaagtgaaaaaagaaacaagagagtgcacatataattaaaaggaaatggatcatgatggtgtgta |
212 |
Q |
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| T |
2787558 |
taaacattaccatcagcgccgtgaaaactatctgtaaagtgaaaaaagaaacaagagagtgcacatataattaaaaggaaatggatcatgatggtgtgta |
2787657 |
T |
|
| Q |
213 |
cgtgagtgcattggccgttcctatagatcgaaggaaggaccatttcgaatgtgaggagtgttcctgatggaaggaagttaccaagtaaggaagtttttga |
312 |
Q |
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| T |
2787658 |
cgtgagtacattggccgttcctatagatcgaaggaaggaccatttcgaatgtgaggagtgttcctgatggaaggaagttaccaagtaaggaagtttttga |
2787757 |
T |
|
| Q |
313 |
aagggttttttgcacgcctttcgccattatggcacgacgcttcttgccatgttccggtggatcagaaggctgctgcgttacggcccccatggcttcttgt |
412 |
Q |
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| T |
2787758 |
aagggttttttgcacgcctttcgccattatggcacgacgcttcttgccatgttccggtggatcagaaggctgctgcgttacggcccccatgacttcttgt |
2787857 |
T |
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| Q |
413 |
ggtggcggtgttgtgttgtagattttgattccaatttcttgttgtgtttgtt |
464 |
Q |
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| T |
2787858 |
ggtggcggtgttgtattgtagattttgattccaatttcttgttgtgtttgtt |
2787909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 14 - 464
Target Start/End: Complemental strand, 19578135 - 19577685
Alignment:
| Q |
14 |
aaatcttgaaaccctaccttgtatttgtcgtcgttaggaaccaaaacagcaagtcctggtttaaaaacggataaccctttcggggtaacaaaaccgtagt |
113 |
Q |
| |
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|||||||||||||| || ||||| ||||| || |||||||||||||||| ||||| ||||||||||| || ||||| ||| | ||| ||||||| |||| |
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| T |
19578135 |
aaatcttgaaacccaactttgtacttgtcatcattaggaaccaaaacagtgagtcccggtttaaaaacagacaacccgttccgagtagcaaaaccatagt |
19578036 |
T |
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| Q |
114 |
aaacgttaccatcagcgccgtgaaaactatctgtaaagtgaaaaaagaaacaagagagtgcacatataattaaaaggaaatggatcatgatggtgtgtac |
213 |
Q |
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| T |
19578035 |
aaacgttaccatccgcgccgtgaaaactgtcggtaaagtgaaagaagaaacaagagagtgcacacatgattaagaggaaatggatcatgatggtatgaac |
19577936 |
T |
|
| Q |
214 |
gtgagtgcattggccgttcctatagatcgaaggaaggaccatttcgaatgtgaggagtgttcctgatggaaggaagttaccaagtaaggaagtttttgaa |
313 |
Q |
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| T |
19577935 |
atgagtgcattgaccatttcggtagattgaaggaaggaccatttcgaatgttatgagtgttcctgttggaaggaagtttccgagtaaggatgtttttgag |
19577836 |
T |
|
| Q |
314 |
agggttttttgcacgcctttcgccattatggcacgacgcttcttgccatgttccggtggatcagaaggctgctgcgttacggcccccatggcttcttgtg |
413 |
Q |
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||||||||||| || ||||| ||||||||||| ||||| ||||||||| ||||||||||||| ||||||| || || ||| | || ||||| ||||||| |
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| T |
19577835 |
agggttttttggacaccttttgccattatggcgcgacgtttcttgccaggttccggtggatcgaaaggctggtgtgtgacgccgcctatggcctcttgtg |
19577736 |
T |
|
| Q |
414 |
gtggcggtgttgtgttgtagattttgattccaatttcttgttgtgtttgtt |
464 |
Q |
| |
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|||| || |||| ||||||| |||||| |||||||||||||| ||||||| |
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|
| T |
19577735 |
gtggaggagttgcattgtagactttgatcccaatttcttgttgagtttgtt |
19577685 |
T |
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