View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2014_high_13 (Length: 476)

Name: NF2014_high_13
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2014_high_13
NF2014_high_13
[»] chr7 (6 HSPs)
chr7 (365-468)||(45110776-45110879)
chr7 (327-468)||(47879900-47880042)
chr7 (365-464)||(34593038-34593138)
chr7 (364-468)||(48384838-48384943)
chr7 (326-462)||(45487132-45487266)
chr7 (365-468)||(29712953-29713050)
[»] chr5 (9 HSPs)
chr5 (365-468)||(23616199-23616302)
chr5 (365-468)||(23847596-23847699)
chr5 (327-468)||(35467608-35467750)
chr5 (365-462)||(10831645-10831743)
chr5 (328-462)||(10832762-10832896)
chr5 (365-468)||(10862741-10862845)
chr5 (365-462)||(10830934-10831032)
chr5 (327-468)||(5712900-5713042)
chr5 (325-353)||(10833359-10833387)
[»] chr2 (1 HSPs)
chr2 (364-468)||(8740864-8740968)
[»] chr6 (4 HSPs)
chr6 (327-468)||(5384640-5384781)
chr6 (369-468)||(1251751-1251851)
chr6 (366-468)||(13853954-13854056)
chr6 (3-122)||(29602974-29603094)
[»] chr3 (5 HSPs)
chr3 (365-468)||(34022307-34022410)
chr3 (327-468)||(49615886-49616026)
chr3 (327-462)||(51057833-51057969)
chr3 (365-467)||(41331793-41331896)
chr3 (364-462)||(43020475-43020574)
[»] chr4 (7 HSPs)
chr4 (319-463)||(1717329-1717473)
chr4 (364-468)||(15666516-15666621)
chr4 (364-468)||(46109158-46109263)
chr4 (365-468)||(52772440-52772544)
chr4 (366-466)||(52605987-52606087)
chr4 (365-468)||(50390919-50391023)
chr4 (324-353)||(15666725-15666754)
[»] chr1 (10 HSPs)
chr1 (366-468)||(38929187-38929288)
chr1 (326-468)||(23860584-23860725)
chr1 (365-468)||(9614656-9614760)
chr1 (365-468)||(51562089-51562193)
chr1 (366-462)||(36834845-36834942)
chr1 (365-462)||(7860705-7860803)
chr1 (366-462)||(26246353-26246451)
chr1 (365-462)||(47778811-47778909)
chr1 (365-468)||(3800476-3800580)
chr1 (323-353)||(38929306-38929336)
[»] chr8 (3 HSPs)
chr8 (364-462)||(27594100-27594199)
chr8 (365-468)||(16847943-16848047)
chr8 (364-469)||(29411070-29411176)


Alignment Details
Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 365 - 468
Target Start/End: Original strand, 45110776 - 45110879
Alignment:
Q  365 cacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaagtacaactttccaatttttctcttgtcatgttttagtaataattaatgaaa 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||    
T  45110776 cacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaagtacaacttttcaattttgcccttgtcatgttttagtaataattaatgaaa 45110875  T
Q  465 gtga 468  Q
    ||||    
T  45110876 gtga 45110879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 327 - 468
Target Start/End: Original strand, 47879900 - 47880042
Alignment:
Q  327 tactccctccggtctcaaatgtagggagnnnnnnnnngcacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaactttcc 425  Q
    |||||||||| ||||||||||||||| |         |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  47879900 tactccctccagtctcaaatgtagggggaaaaaaaaagcacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaatgtacaactttcc 47879999  T
Q  426 aatttttctcttgtcatgttttagtaataattaatgaaagtga 468  Q
    ||| || | ||||||||||||||||||||||||||||||||||    
T  47880000 aatcttgcccttgtcatgttttagtaataattaatgaaagtga 47880042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 365 - 464
Target Start/End: Complemental strand, 34593138 - 34593038
Alignment:
Q  365 cacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaactttccaatttttctcttgtcatgttttagtaataattaatgaa 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| | ||||||||| |||||||||||||||||||    
T  34593138 cacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaatatacaactttccaattttgcccttgtcatgatttagtaataattaatgaa 34593039  T
Q  464 a 464  Q
    |    
T  34593038 a 34593038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 364 - 468
Target Start/End: Original strand, 48384838 - 48384943
Alignment:
Q  364 gcacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaactttccaatttttctcttgtcatgttttagtaataattaatga 462  Q
    ||||||||||||| ||||||||||| |||||||||||||||| ||||||| |||||||||| ||||||| | ||||||||||||||||||||||||||||    
T  48384838 gcacaccaattaaaaaaatgaattggttacattgaagtcatgataaaaaatgtacaacttttcaattttgcccttgtcatgttttagtaataattaatga 48384937  T
Q  463 aagtga 468  Q
    ||||||    
T  48384938 aagtga 48384943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 326 - 462
Target Start/End: Original strand, 45487132 - 45487266
Alignment:
Q  326 ctactccctccggtctcaaatgtagggagnnnnnnnnngcacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaactttc 424  Q
    |||||||||||||||||||||||||||||          |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||     
T  45487132 ctactccctccggtctcaaatgtagggagaaaaaaaa--cacaccaattaagaaaatgaat-gattacattgaagtcatgttaaaaaatgtacaactttt 45487228  T
Q  425 caatttttctcttgtcatgttttagtaataattaatga 462  Q
    ||||||| | ||| ||||||||||||||||||||||||    
T  45487229 caattttgcccttctcatgttttagtaataattaatga 45487266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 365 - 468
Target Start/End: Complemental strand, 29713050 - 29712953
Alignment:
Q  365 cacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaagtacaactttccaatttttctcttgtcatgttttagtaataattaatgaaa 464  Q
    ||||||||||||||||||||| |||||||||      |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  29713050 cacaccaattaagaaaatgaaatgattacat------catgttaaaaaagtacaactttccaattttgcccttgtcatgttttagtaataattaatgaaa 29712957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 365 - 468
Target Start/End: Original strand, 23616199 - 23616302
Alignment:
Q  365 cacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaagtacaactttccaatttttctcttgtcatgttttagtaataattaatgaaa 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||    
T  23616199 cacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaagtacaacttttcaattttgcccttgtcatgttttagtaataattaatgaaa 23616298  T
Q  465 gtga 468  Q
    ||||    
T  23616299 gtga 23616302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 365 - 468
Target Start/End: Original strand, 23847596 - 23847699
Alignment:
Q  365 cacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaagtacaactttccaatttttctcttgtcatgttttagtaataattaatgaaa 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||    
T  23847596 cacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaagtacaacttttcaattttgcccttgtcatgttttagtaataattaatgaaa 23847695  T
Q  465 gtga 468  Q
    ||||    
T  23847696 gtga 23847699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 327 - 468
Target Start/End: Original strand, 35467608 - 35467750
Alignment:
Q  327 tactccctccggtctcaaatgtagggagnnnnnnnnngcacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaactttcc 425  Q
    |||||| ||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35467608 tactccttccggtctcaaatgtagggaaaaaaaaaaagcacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaatgtacaactttcc 35467707  T
Q  426 aatttttctcttgtcatgttttagtaataattaatgaaagtga 468  Q
    |||||| | ||||||||||||||||||||||||||||||||||    
T  35467708 aattttgcccttgtcatgttttagtaataattaatgaaagtga 35467750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 365 - 462
Target Start/End: Complemental strand, 10831743 - 10831645
Alignment:
Q  365 cacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaactttccaatttttctcttgtcatgttttagtaataattaatga 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||    
T  10831743 cacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaatgtacaactttccaattttgcccttgtcatgttttagtaataattaatga 10831645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 328 - 462
Target Start/End: Original strand, 10832762 - 10832896
Alignment:
Q  328 actccctccggtctcaaatgtagggagnnnnnnnnngcacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaactttcca 426  Q
    ||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10832762 actccctccggtctcaaatgtaggga-aaaaaaaaagcacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaatgtacaactttcca 10832860  T
Q  427 atttttctcttgtcatgttttagtaataattaatga 462  Q
    |||||   ||||||||||||||||||||||||||||    
T  10832861 attttgtccttgtcatgttttagtaataattaatga 10832896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 365 - 468
Target Start/End: Original strand, 10862741 - 10862845
Alignment:
Q  365 cacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaactttccaatttttctcttgtcatgttttagtaataattaatgaa 463  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||    
T  10862741 cacaccaattaagaaaatgaattgattacattgaaatcatgataaaaaatgtacaactttccaattttgcccttgtcatgttttagtaataattaatgaa 10862840  T
Q  464 agtga 468  Q
    |||||    
T  10862841 agtga 10862845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 365 - 462
Target Start/End: Original strand, 10830934 - 10831032
Alignment:
Q  365 cacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaactttccaatttttctcttgtcatgttttagtaataattaatga 462  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||    
T  10830934 cacaccaattaagaaaatgaattgattacattgaagttatgttaaaaaatgtacaactttccaattttgcccttgtcatgttttagtaataattaatga 10831032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 327 - 468
Target Start/End: Original strand, 5712900 - 5713042
Alignment:
Q  327 tactccctccggtctcaaatgtagggagnnnnnnnnngcacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaactttcc 425  Q
    ||||||||||||||||||||||||||           ||||| ||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||     
T  5712900 tactccctccggtctcaaatgtaggggaaaaaaaaaagcacatcaattaaaaaaatgaattgattacattgaaatcatgttaaaaaatgtacaactttct 5712999  T
Q  426 aatttttctcttgtcatgttttagtaataattaatgaaagtga 468  Q
    |||||| | |||||||||||||||||||||||||| |||||||    
T  5713000 aattttgcccttgtcatgttttagtaataattaataaaagtga 5713042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 353
Target Start/End: Complemental strand, 10833387 - 10833359
Alignment:
Q  325 actactccctccggtctcaaatgtaggga 353  Q
    |||||||||||||||||||||||||||||    
T  10833387 actactccctccggtctcaaatgtaggga 10833359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 364 - 468
Target Start/End: Complemental strand, 8740968 - 8740864
Alignment:
Q  364 gcacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaagtacaactttccaatttttctcttgtcatgttttagtaataattaatgaa 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||| ||||||||||||||||||||    
T  8740968 gcacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaatgtacaactttccaattttgcccttgtcatattttagtaataattaatgaa 8740869  T
Q  464 agtga 468  Q
    |||||    
T  8740868 agtga 8740864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 4e-42; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 327 - 468
Target Start/End: Original strand, 5384640 - 5384781
Alignment:
Q  327 tactccctccggtctcaaatgtagggagnnnnnnnnngcacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaactttcc 425  Q
    |||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  5384640 tactccctccggtctcaaatgtaggga-aaaaaaaaagcacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaatgtacaacttttc 5384738  T
Q  426 aatttttctcttgtcatgttttagtaataattaatgaaagtga 468  Q
    |||||| | ||||||||||||||||||||||||||||||||||    
T  5384739 aattttgcccttgtcatgttttagtaataattaatgaaagtga 5384781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 369 - 468
Target Start/End: Original strand, 1251751 - 1251851
Alignment:
Q  369 ccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaactttccaatttttctcttgtcatgttttagtaataattaatgaaagtg 467  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  1251751 ccaattaagaaaatgaattgattacattgaagtcatgttaaaaaatgtacaactttccaattttgcccttgtcatgttttagtaataattaatgaaagtg 1251850  T
Q  468 a 468  Q
    |    
T  1251851 a 1251851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 366 - 468
Target Start/End: Complemental strand, 13854056 - 13853954
Alignment:
Q  366 acaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaagtacaactttccaatttttctcttgtcatgttttagtaataattaatgaaag 465  Q
    ||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||| ||||||| | ||||||||| |||||||||||||||||||||    
T  13854056 acaccaattaaaaaaatgaaatgattacatcgaagtcatgttaaaaaagtacaacttttcaattttgcccttgtcatgctttagtaataattaatgaaag 13853957  T
Q  466 tga 468  Q
    |||    
T  13853956 tga 13853954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 29603094 - 29602974
Alignment:
Q  3 ggctatattaaaatcaatggagatggttcttttcttggaaattatggtaatgcaagttttggaggtcacttgaaaaatgataagggaatttagatt-aag 101  Q
    ||||||||||| ||||||| ||||||||||| | ||| ||||   ||||||||| ||||||||||||  |||| ||| |||| |||||||| |||| |||    
T  29603094 ggctatattaagatcaatgtagatggttcttcttttgaaaatcccggtaatgcatgttttggaggtcttttgagaaacgatatgggaatttggattcaag 29602995  T
Q  102 gtttttctgattcttgtggta 122  Q
    | ||||||| |||||||||||    
T  29602994 gattttctggttcttgtggta 29602974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 365 - 468
Target Start/End: Complemental strand, 34022410 - 34022307
Alignment:
Q  365 cacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaagtacaactttccaatttttctcttgtcatgttttagtaataattaatgaaa 464  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||    
T  34022410 cacaccacttaagaaaatgaattgattacattgaagtcatgttaaaaaagtacaacttttcaattttgcccttgtcatgttttagtaataattaatgaaa 34022311  T
Q  465 gtga 468  Q
    ||||    
T  34022310 gtga 34022307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 327 - 468
Target Start/End: Complemental strand, 49616026 - 49615886
Alignment:
Q  327 tactccctccggtctcaaatgtagggagnnnnnnnnngcacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaagtacaactttcca 426  Q
    ||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  49616026 tactccctccggtctcaaatgtagggagaaaaaaaaa-cacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaagtacaacttttca 49615928  T
Q  427 atttttctcttgtcatgttttagtaataattaatgaaagtga 468  Q
    |||||    |||||||||||||||||||||||||||||||||    
T  49615927 attttgtcattgtcatgttttagtaataattaatgaaagtga 49615886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 327 - 462
Target Start/End: Original strand, 51057833 - 51057969
Alignment:
Q  327 tactccctccggtctcaaatgtagggagnnnnnnnnngcacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaactttcc 425  Q
    |||||| |||| ||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  51057833 tactccatccgatctcaaatgtagggagaaaaaaaaagcacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaatatacaactttcc 51057932  T
Q  426 aatttttctcttgtcatgttttagtaataattaatga 462  Q
    |||||| | ||||||||||||||||||||||||||||    
T  51057933 aattttgcccttgtcatgttttagtaataattaatga 51057969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 365 - 467
Target Start/End: Original strand, 41331793 - 41331896
Alignment:
Q  365 cacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaactttccaatttttctcttgtcatgttttagtaataattaatgaa 463  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||    
T  41331793 cacactaattaagaaaatgaattgattacattgaaatcatgttaaaaaatgtacaactttccaattttgcccttgtcatgttttagtaataattaatgaa 41331892  T
Q  464 agtg 467  Q
    ||||    
T  41331893 agtg 41331896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 364 - 462
Target Start/End: Original strand, 43020475 - 43020574
Alignment:
Q  364 gcacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaactttccaatttttctcttgtcatgttttagtaataattaatga 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||| | ||||||||||||||||||||||||||||    
T  43020475 gcacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaatatacaacttttcaattttgcccttgtcatgttttagtaataattaatga 43020574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 319 - 463
Target Start/End: Complemental strand, 1717473 - 1717329
Alignment:
Q  319 ttatttactactccctccggtctcaaatgtagggagnnnnnnnnngcacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtac 417  Q
    ||||| ||||||||||||||||| |||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1717473 ttattgactactccctccggtcttaaatgtaggga-aaaaaaaaagcacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaatgtac 1717375  T
Q  418 aactttccaatttttctcttgtcatgttttagtaataattaatgaa 463  Q
    |||||||||||||| | |||||||||||||||||||||||||||||    
T  1717374 aactttccaattttgcccttgtcatgttttagtaataattaatgaa 1717329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 364 - 468
Target Start/End: Original strand, 15666516 - 15666621
Alignment:
Q  364 gcacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaactttccaatttttctcttgtcatgttttagtaataattaatga 462  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||    
T  15666516 gcacatcaattaagaaaatgaattgattacattgaagtcatgttaaaaaatgtacaactttccaattttgcccttgtcatgttttagtaataattaatga 15666615  T
Q  463 aagtga 468  Q
    ||||||    
T  15666616 aagtga 15666621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 364 - 468
Target Start/End: Complemental strand, 46109263 - 46109158
Alignment:
Q  364 gcacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaactttccaatttttctcttgtcatgttttagtaataattaatga 462  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||    
T  46109263 gcacaccaattaaaaaaatgaattgattacattgaagtcatgttaaaaaatgtacaactttccaattttgcccttgtcatgttttagtaataattaatga 46109164  T
Q  463 aagtga 468  Q
    ||||||    
T  46109163 aagtga 46109158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 365 - 468
Target Start/End: Complemental strand, 52772544 - 52772440
Alignment:
Q  365 cacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaactttccaatttttctcttgtcatgttttagtaataattaatgaa 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||   |||||||||||||||||||||||||||||    
T  52772544 cacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaatgtacaacttttcaattttgtccttgtcatgttttagtaataattaatgaa 52772445  T
Q  464 agtga 468  Q
    |||||    
T  52772444 agtga 52772440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 366 - 466
Target Start/End: Original strand, 52605987 - 52606087
Alignment:
Q  366 acaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaagtacaactttccaatttttctcttgtcatgttttagtaataattaatgaaag 465  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||  |||||| | |||||||||||||||||||||||||||||||    
T  52605987 acaccaattaaaaaaataaattgattacattgaagtcatgttaaaaaagtacaattttttaattttgcccttgtcatgttttagtaataattaatgaaag 52606086  T
Q  466 t 466  Q
    |    
T  52606087 t 52606087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 365 - 468
Target Start/End: Complemental strand, 50391023 - 50390919
Alignment:
Q  365 cacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaactttccaatttttctcttgtcatgttttagtaataattaatgaa 463  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||| | ||||| |||||||||||||||||||| ||    
T  50391023 cacatcaattaagaaaatgaattgattacattgaaatcatgttaaaaaatgtataactttccaattttgcccttgttatgttttagtaataattaataaa 50390924  T
Q  464 agtga 468  Q
    |||||    
T  50390923 agtga 50390919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 353
Target Start/End: Complemental strand, 15666754 - 15666725
Alignment:
Q  324 tactactccctccggtctcaaatgtaggga 353  Q
    ||||||||||||||||||||||||||||||    
T  15666754 tactactccctccggtctcaaatgtaggga 15666725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 366 - 468
Target Start/End: Complemental strand, 38929288 - 38929187
Alignment:
Q  366 acaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaagtacaactttccaatttttctcttgtcatgttttagtaataattaatgaaag 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||    
T  38929288 acaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaagtacaacttttcaattttgc-cttgtcatgttttagtaataattaatgaaag 38929190  T
Q  466 tga 468  Q
    |||    
T  38929189 tga 38929187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 326 - 468
Target Start/End: Original strand, 23860584 - 23860725
Alignment:
Q  326 ctactccctccggtctcaaatgtagggagnnnnnnnnngcacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaactttc 424  Q
    ||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||     
T  23860584 ctactccctccggtctcaaatgtaggga--aaaaaaaagcacaccaattaagaaaatgaattgattacattgaagacatgttaaaaaatgtacaactttt 23860681  T
Q  425 caatttttctcttgtcatgttttagtaataattaatgaaagtga 468  Q
    ||||||| | ||||||||||||||||||||||||||||||||||    
T  23860682 caattttgcccttgtcatgttttagtaataattaatgaaagtga 23860725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 365 - 468
Target Start/End: Complemental strand, 9614760 - 9614656
Alignment:
Q  365 cacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaactttccaatttttctcttgtcatgttttagtaataattaatgaa 463  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||| | |||||||||||||||||||||||||||||    
T  9614760 cacaccaattaaaaaaatgaattgattacattgaagtcatgttaaaaaatgtacaacttttcaattttgcccttgtcatgttttagtaataattaatgaa 9614661  T
Q  464 agtga 468  Q
    |||||    
T  9614660 agtga 9614656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 365 - 468
Target Start/End: Complemental strand, 51562193 - 51562089
Alignment:
Q  365 cacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaactttccaatttttctcttgtcatgttttagtaataattaatgaa 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| | |||||||||||||| ||||||||||||||    
T  51562193 cacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaatgtacaacttttcaattttgcccttgtcatgttttaataataattaatgaa 51562094  T
Q  464 agtga 468  Q
    |||||    
T  51562093 agtga 51562089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 366 - 462
Target Start/End: Complemental strand, 36834942 - 36834845
Alignment:
Q  366 acaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaactttccaatttttctcttgtcatgttttagtaataattaatga 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| | ||||||||||||||||||||||||||||    
T  36834942 acaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaatatacaactttccaattttacccttgtcatgttttagtaataattaatga 36834845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 365 - 462
Target Start/End: Original strand, 7860705 - 7860803
Alignment:
Q  365 cacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaactttccaatttttctcttgtcatgttttagtaataattaatga 462  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||| | ||||||||||||||||||||||||||||    
T  7860705 cacaccaattaaaaaaatgaattgattacattgaagtcatgttaaaaaatgtacaacttttcaattttgcccttgtcatgttttagtaataattaatga 7860803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 366 - 462
Target Start/End: Complemental strand, 26246451 - 26246353
Alignment:
Q  366 acaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaac-tttccaatttttctcttgtcatgttttagtaataattaatga 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||||||||||    
T  26246451 acaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaatgtacaacttttccaattttgcccttgtcatgttttagtaataattaatga 26246353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 365 - 462
Target Start/End: Original strand, 47778811 - 47778909
Alignment:
Q  365 cacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaactttccaatttttctcttgtcatgttttagtaataattaatga 462  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  |||||||||||||||||||||||||||    
T  47778811 cacaccaattaaaaaaatgaattgattacattgaagtcatgttaaaaaatgtacaactttccaattttgcctttgtcatgttttagtaataattaatga 47778909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 365 - 468
Target Start/End: Complemental strand, 3800580 - 3800476
Alignment:
Q  365 cacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaactttccaatttttctcttgtcatgttttagtaataattaatgaa 463  Q
    |||||||||||||||||| |||||||||||||||| |||| |||||||| |||||||||| ||||||| | |||||||||||||||||||||||||||||    
T  3800580 cacaccaattaagaaaataaattgattacattgaaatcatattaaaaaatgtacaacttttcaattttgcccttgtcatgttttagtaataattaatgaa 3800481  T
Q  464 agtga 468  Q
    |||||    
T  3800480 agtga 3800476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 353
Target Start/End: Complemental strand, 38929336 - 38929306
Alignment:
Q  323 ttactactccctccggtctcaaatgtaggga 353  Q
    |||||||||||||||||||||||||||||||    
T  38929336 ttactactccctccggtctcaaatgtaggga 38929306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 364 - 462
Target Start/End: Complemental strand, 27594199 - 27594100
Alignment:
Q  364 gcacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaactttccaatttttctcttgtcatgttttagtaataattaatga 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||    
T  27594199 gcacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaatgtacaactttccaattttgcccttgtcatgttttagtaataattaatga 27594100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 365 - 468
Target Start/End: Complemental strand, 16848047 - 16847943
Alignment:
Q  365 cacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaactttccaatttttctcttgtcatgttttagtaataattaatgaa 463  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||| | |||||||||||||||||||||||||||||    
T  16848047 cacaccaattaagaaaatgaattgattacattgaagtcatgataaaaaatgttcaactttccaattttgcccttgtcatgttttagtaataattaatgaa 16847948  T
Q  464 agtga 468  Q
    |||||    
T  16847947 agtga 16847943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 364 - 469
Target Start/End: Complemental strand, 29411176 - 29411070
Alignment:
Q  364 gcacaccaattaagaaaatgaattgattacattgaagtcatgttaaaaaa-gtacaactttccaatttttctcttgtcatgttttagtaataattaatga 462  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||||||||| |||||||||| ||||||| | ||||| ||||||||||||||||||||||    
T  29411176 gcacatcaattaagaaaatgaattaattacattgaaatcatgttaaaaaatgtacaacttttcaattttgcccttgttatgttttagtaataattaatga 29411077  T
Q  463 aagtgat 469  Q
    |||||||    
T  29411076 aagtgat 29411070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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