View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2014_high_15 (Length: 472)

Name: NF2014_high_15
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2014_high_15
NF2014_high_15
[»] chr4 (4 HSPs)
chr4 (1-453)||(35155567-35156017)
chr4 (1-451)||(35162589-35163021)
chr4 (303-386)||(15556228-15556311)
chr4 (130-185)||(15556435-15556490)
[»] chr8 (3 HSPs)
chr8 (27-453)||(9692271-9692694)
chr8 (40-453)||(9675262-9675672)
chr8 (306-388)||(21464019-21464101)
[»] chr3 (23 HSPs)
chr3 (306-440)||(46539159-46539293)
chr3 (231-421)||(47397062-47397252)
chr3 (306-430)||(46526254-46526378)
chr3 (306-420)||(5156427-5156541)
chr3 (307-430)||(5160446-5160569)
chr3 (301-431)||(16025655-16025785)
chr3 (309-430)||(45883565-45883686)
chr3 (307-417)||(51944075-51944185)
chr3 (74-182)||(16025907-16026012)
chr3 (306-371)||(46544703-46544768)
chr3 (89-185)||(47413798-47413892)
chr3 (96-181)||(46236399-46236482)
chr3 (131-184)||(51944317-51944370)
chr3 (311-359)||(46236628-46236676)
chr3 (139-182)||(5156674-5156717)
chr3 (89-183)||(46480221-46480313)
chr3 (219-276)||(46491029-46491086)
chr3 (306-359)||(46532162-46532215)
chr3 (133-182)||(46553837-46553886)
chr3 (306-379)||(46554013-46554086)
chr3 (307-387)||(46480005-46480085)
chr3 (134-182)||(46535370-46535418)
chr3 (306-414)||(46548832-46548940)
[»] chr2 (4 HSPs)
chr2 (294-359)||(20144872-20144937)
chr2 (311-359)||(20168854-20168902)
chr2 (76-159)||(20168616-20168696)
chr2 (76-159)||(20359588-20359668)
[»] chr7 (1 HSPs)
chr7 (239-330)||(17736199-17736290)


Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 35156017 - 35155567
Alignment:
Q  1 acattccttttaaaaaatgagtttccctcgttatctacgtatgactgatgcaattgattgtggtttcagaaattaagatcactcagcaaagagggttgag 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| ||||||||||||||| |||||||||||||||     
T  35156017 acattccttttaaaaaatgagtttccctcgttatctatgtatgattgatgcaattgattgcggtttcggaaattaagatcacttagcaaagagggttgaa 35155918  T
Q  101 cacttgtccggcaaagaggattatgtttgggtcaaatcttctctaattaaaaataagaaaggatgatcagctataaagtctagtccggttgatctaccca 200  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35155917 cacttgtccggcaaagaggatt--gtttgggtcaaatcttctctaattaaaaataagaaagggtgatcagctataaagtctagtccggttgatctaccca 35155820  T
Q  201 aggtaaataatgttgtactggctgcaacagctttagtgcctttttcgtttacttcaataaaacacttctgaaatatgctgctaacggagagattttgacc 300  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  35155819 aggtaaataatgtagtactggctgcaacagctttagtgcctttttcgtttacttcaataaaacacttctgaaatatgttgctaacggagagattttgacc 35155720  T
Q  301 ttcaagagagtccaccatttttgtcaaacccccagaagagaaaggtaaaatcactcctaggtctttcagcatatgagaagattcaagcttagatgaaaat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35155719 ttcaagagagtccaccatttttgtcaaacccccagaagagaaaggtaaaatcactcctaggtctttcagcatatgagaagattcaagcttagatgaaaat 35155620  T
Q  401 ttgaatcttggaattttgaagccacctactcgcactgttttataaggaagctt 453  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35155619 ttgaatcttggaattttgaagccacctactcgcgctgttttataaggaagctt 35155567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 35163021 - 35162589
Alignment:
Q  1 acattccttttaaaaaatgagtttccctcgttatctacgtatgactgatgcaattgattgtggtttcagaaattaagatcactcagcaaagagggttgag 100  Q
    |||||||||||||||| |||||||||||||||||||||| ||||    |||||||||||| ||||| |||  ||| |||||||            |||||    
T  35163021 acattccttttaaaaagtgagtttccctcgttatctacgaatga----tgcaattgattgcggtttgagatgttatgatcact------------ttgag 35162938  T
Q  101 cacttgtccggcaaagaggattatgtttgggtcaaatcttctctaattaaaaataagaaaggatgatcagctataaagtctagtccggttgatctaccca 200  Q
    ||||||||| ||||||||||||  ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||   ||| |     
T  35162937 cacttgtcccgcaaagaggatt--gtttgggtcgaatcttctctaattagaaataagaaaggatgatcagctataaagtctactccggttggaatacact 35162840  T
Q  201 aggtaaataatgttgtactggctgcaacagctttagtgcctttttcgtttacttcaataaaacacttctgaaatatgctgctaacggagagattttgacc 300  Q
     ||  |  | ||     ||||||||| |||||   |||||||| || ||||||||||| ||| |||| ||||||||| ||  |||  | || ||||||||    
T  35162839 tggccataagtgcacagctggctgcagcagctacggtgcctttctcatttacttcaatgaaagacttgtgaaatatgttggaaactaaaaggttttgacc 35162740  T
Q  301 ttcaagagagtccaccatttttgtcaaacccccagaagagaaaggtaaaatcactcctaggtctttcagcatatgagaagattcaagcttagatgaaaat 400  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| | |||||| |||||||  | ||||||||    
T  35162739 ttcaagtgagtccaccatttttgtcaaacctccagaagagaaaggtaaaatcactcctagatccttcagcacacgagaagtttcaagcccatatgaaaat 35162640  T
Q  401 ttgaatcttggaattttgaagccacctactcgcactgttttataaggaagc 451  Q
    |||||| ||||||||||||||||||||||| ||||| | ||| ||||||||    
T  35162639 ttgaattttggaattttgaagccacctactggcactctattacaaggaagc 35162589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 303 - 386
Target Start/End: Complemental strand, 15556311 - 15556228
Alignment:
Q  303 caagagagtccaccatttttgtcaaacccccagaagagaaaggtaaaatcactcctaggtctttcagcatatgagaagattcaa 386  Q
    |||| |||||||||||||| |||||||| || | |||||||||||||| |||||||||||| |||||||||| ||||| |||||    
T  15556311 caagtgagtccaccattttagtcaaacctccgggagagaaaggtaaaaccactcctaggtccttcagcatatcagaagtttcaa 15556228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 15556490 - 15556435
Alignment:
Q  130 ggtcaaatcttctctaattaaaaataagaaaggatgatcagctataaagtctagtc 185  Q
    ||||||||||||||| |||| ||||||||| || || ||||||| |||||||||||    
T  15556490 ggtcaaatcttctcttattagaaataagaatgggtggtcagctacaaagtctagtc 15556435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 27 - 453
Target Start/End: Original strand, 9692271 - 9692694
Alignment:
Q  27 ctcgttatctacgtatgactgatgcaattgattgtggtttcagaaattaagatcactcagcaaagagggttgagcacttgtccggcaaagaggattatgt 126  Q
    ||||||||||| |  ||| ||||||||||||||| |||   |||| |||||||||| || ||| |||| ||||| || ||||||||||||| |||   ||    
T  9692271 ctcgttatctatgagtgagtgatgcaattgattgcggtacgagaagttaagatcacccaacaa-gaggattgagaacctgtccggcaaagatgatc--gt 9692367  T
Q  127 ttgggtcaaatcttctctaattaaaaataagaaaggatgatcagctataaagtctagtccggttgatctacccaaggtaaataatgttgtactggctgca 226  Q
    ||||||||||||||||||||||| ||||| |||||| ||||| ||||||||||||| ||| ||||   ||| || ||  |  | ||   || ||||   |    
T  9692368 ttgggtcaaatcttctctaattagaaataggaaagggtgatcggctataaagtctattccagttggcatacacatggccaccactgcaatattggcctta 9692467  T
Q  227 acagctttagtgcctttttcgtttacttcaataaaacacttctgaaatatgctgctaacggagagattttgaccttcaagagagtccaccatttttgtca 326  Q
     |||||| ||||||||  |||||||||||||| ||| |||| ||||||||| ||  ||| || || | ||||||||||||||||||||||||||||||||    
T  9692468 gcagcttcagtgccttcctcgtttacttcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccatttttgtca 9692567  T
Q  327 aacccccagaagagaaaggtaaaatcactcctaggtctttcagcatatgagaagattcaagcttagatgaaaatttgaatcttggaattttgaagccacc 426  Q
    |||| |||||||||||||||||| |||||||||  || |||  |||| |||||| |||||||  | |||||||||||||||||||||||| |||  ||||    
T  9692568 aacctccagaagagaaaggtaaactcactcctaactccttcgtcatacgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaattcacc 9692667  T
Q  427 tactcgcactgttttataaggaagctt 453  Q
    || || ||||  |||||||||||||||    
T  9692668 tattctcactagtttataaggaagctt 9692694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 40 - 453
Target Start/End: Original strand, 9675262 - 9675672
Alignment:
Q  40 tatgactgatgcaattgattgtggtttcagaaattaagatcactcagcaaagagggttgagcacttgtccggcaaagaggattatgtttgggtcaaatct 139  Q
    ||||| ||||||||||||||| ||||| |||| |||||||||| || ||| |||| ||||| || ||||||||||||| ||||  ||||||||| |||||    
T  9675262 tatgagtgatgcaattgattgcggtttgagaagttaagatcacccaacaa-gaggattgagaacctgtccggcaaagatgatt--gtttgggtcgaatct 9675358  T
Q  140 tctctaattaaaaataagaaaggatgatcagctataaagtctagtccggttgatctacccaaggtaaataatgttgtactggctgcaacagctttagtgc 239  Q
    |||||||||| ||||| |||||| ||||| ||||||||||||| ||| ||||    || ||||     || | | | | |||||| | |||||| |||||    
T  9675359 tctctaattagaaataggaaagggtgatcggctataaagtctattccagttggcgcacacaagacccctattttagcattggctgtagcagcttcagtgc 9675458  T
Q  240 ctttttcgtttacttcaataaaacacttctgaaatatgctgctaacggagagattttgaccttcaagagagtccaccatttttgtcaaacccccagaaga 339  Q
    |||  || |||||||||||   | |||| ||||||||| ||  ||| || |  | |||||||||||||||||||||||||||||||||||| ||||||||    
T  9675459 cttcctcatttacttcaatggtagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccatttttgtcaaacctccagaaga 9675558  T
Q  340 gaaaggtaaaatcactcctaggtctttcagcatatgagaagattcaagcttagatgaaaatttgaatcttggaattttgaagccacctactcgcactgtt 439  Q
    ||||||||||||||||||||| || |||| |||  |||||| |||||||  | |||||||||||||||||||||||| |||   |||||||  ||||  |    
T  9675559 gaaaggtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaaattacctactttcactcgt 9675658  T
Q  440 ttataaggaagctt 453  Q
    ||||||||||||||    
T  9675659 ttataaggaagctt 9675672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 306 - 388
Target Start/End: Original strand, 21464019 - 21464101
Alignment:
Q  306 gagagtccaccatttttgtcaaacccccagaagagaaaggtaaaatcactcctaggtctttcagcatatgagaagattcaagc 388  Q
    ||||||||||||||||||||||| | ||   |||||||||||||| ||| ||||| ||||||||||||| |||| ||||||||    
T  21464019 gagagtccaccatttttgtcaaagctccttcagagaaaggtaaaaccacgcctagctctttcagcatatcagaacattcaagc 21464101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 306 - 440
Target Start/End: Complemental strand, 46539293 - 46539159
Alignment:
Q  306 gagagtccaccatttttgtcaaacccccagaagagaaaggtaaaatcactcctaggtctttcagcatatgagaagattcaagcttagatgaaaatttgaa 405  Q
    ||||||||||||||||||||||||| ||   |||||||||||||| || |||||| || || ||||||| ||||| |||||||| | | |||| ||||||    
T  46539293 gagagtccaccatttttgtcaaacctccttgagagaaaggtaaaaccattcctagctccttaagcatattagaagtttcaagctcaaaagaaattttgaa 46539194  T
Q  406 tcttggaattttgaagccacctactcgcactgttt 440  Q
    |||||||||| ||||| ||||||||||||||||||    
T  46539193 tcttggaattctgaagtcacctactcgcactgttt 46539159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 231 - 421
Target Start/End: Original strand, 47397062 - 47397252
Alignment:
Q  231 ctttagtgcctttttcgtttacttcaataaaacacttctgaaatatgctgctaacggagagattttgaccttcaagagagtccaccatttttgtcaaacc 330  Q
    ||||||||||||| || ||||||||||| ||| |||||||||||||| ||  |||  | || ||||||||  | ||| |||||| ||||||||| |||||    
T  47397062 ctttagtgcctttctcatttacttcaatgaaatacttctgaaatatgttggaaacaaaaaggttttgacccgctagaaagtccatcatttttgttaaacc 47397161  T
Q  331 cccagaagagaaaggtaaaatcactcctaggtctttcagcatatgagaagattcaagcttagatgaaaatttgaatcttggaattttgaag 421  Q
     ||    ||||||||||||||||||||||  || |||| ||||| ||||| |||||||  |  ||||||||||||||||||||||||||||    
T  47397162 tccgagggagaaaggtaaaatcactcctaactccttcaacatatcagaagtttcaagccaaattgaaaatttgaatcttggaattttgaag 47397252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 306 - 430
Target Start/End: Original strand, 46526254 - 46526378
Alignment:
Q  306 gagagtccaccatttttgtcaaacccccagaagagaaaggtaaaatcactcctaggtctttcagcatatgagaagattcaagcttagatgaaaatttgaa 405  Q
    |||||||||| || ||||||||||||||| |||||||||||||||||||| |||  ||||||| ||| |||||||  ||||||| | |||||||||||||    
T  46526254 gagagtccacaatatttgtcaaacccccacaagagaaaggtaaaatcacttctaactctttcaacatttgagaagtgtcaagctcaaatgaaaatttgaa 46526353  T
Q  406 tcttggaattttgaagccacctact 430  Q
    | |||||||| ||||  ||||||||    
T  46526354 ttttggaattctgaaatcacctact 46526378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 306 - 420
Target Start/End: Complemental strand, 5156541 - 5156427
Alignment:
Q  306 gagagtccaccatttttgtcaaacccccagaagagaaaggtaaaatcactcctaggtctttcagcatatgagaagattcaagcttagatgaaaatttgaa 405  Q
    ||||||||||||||||||||||||| |||  || ||||||||||||||||||||| ||||| | |||||  |||| |||||||| | |||||| ||||||    
T  5156541 gagagtccaccatttttgtcaaacctccacgagtgaaaggtaaaatcactcctagctctttgaacatatcggaagtttcaagctcaaatgaaattttgaa 5156442  T
Q  406 tcttggaattttgaa 420  Q
    |||||||||| ||||    
T  5156441 tcttggaattctgaa 5156427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 307 - 430
Target Start/End: Complemental strand, 5160569 - 5160446
Alignment:
Q  307 agagtccaccatttttgtcaaacccccagaagagaaaggtaaaatcactcctaggtctttcagcatatgagaagattcaagcttagatgaaaatttgaat 406  Q
    ||||||||||||||||||||||||  ||  || |||||||||| |||||||||  || |||||||||| ||||| |||||||| | |||||| |||||||    
T  5160569 agagtccaccatttttgtcaaaccttcacgagtgaaaggtaaagtcactcctaactccttcagcatatcagaagtttcaagctcaaatgaaattttgaat 5160470  T
Q  407 cttggaattttgaagccacctact 430  Q
    ||||||||| ||||  ||||||||    
T  5160469 cttggaattctgaattcacctact 5160446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 301 - 431
Target Start/End: Complemental strand, 16025785 - 16025655
Alignment:
Q  301 ttcaagagagtccaccatttttgtcaaacccccagaagagaaaggtaaaatcactcctaggtctttcagcatatgagaagattcaagcttagatgaaaat 400  Q
    ||||||| |||||||||||||||||||||| |||| ||||||||||||||  ||||| || || |||||||||| ||||| ||||| |  | ||||||      
T  16025785 ttcaagaaagtccaccatttttgtcaaacctccaggagagaaaggtaaaactactccaagctccttcagcatatcagaagtttcaaacccaaatgaaacc 16025686  T
Q  401 ttgaatcttggaattttgaagccacctactc 431  Q
    ||||| ||||||||| ||||  |||||||||    
T  16025685 ttgaaccttggaattctgaaatcacctactc 16025655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 309 - 430
Target Start/End: Original strand, 45883565 - 45883686
Alignment:
Q  309 agtccaccatttttgtcaaacccccagaagagaaaggtaaaatcactcctaggtctttcagcatatgagaagattcaagcttagatgaaaatttgaatct 408  Q
    |||||||||||||||||||||  |||  |||||||||| ||| ||||||||  || |||| ||||| ||||| |||||||  | ||||||  ||||||||    
T  45883565 agtccaccatttttgtcaaacttccacgagagaaaggtgaaaccactcctaactccttcaacatattagaagtttcaagcccaaatgaaacattgaatct 45883664  T
Q  409 tggaattttgaagccacctact 430  Q
    ||||||| ||||| ||||||||    
T  45883665 tggaattctgaagtcacctact 45883686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 307 - 417
Target Start/End: Complemental strand, 51944185 - 51944075
Alignment:
Q  307 agagtccaccatttttgtcaaacccccagaagagaaaggtaaaatcactcctaggtctttcagcatatgagaagattcaagcttagatgaaaatttgaat 406  Q
    |||||||||||||||||| ||||| ||||  ||||||||||||| ||||||||| |  || |||||| ||| || |||||||| | ||||||  ||||||    
T  51944185 agagtccaccatttttgtaaaacctccaggtgagaaaggtaaaaccactcctagcttctttagcatacgagtagcttcaagctcaaatgaaatattgaat 51944086  T
Q  407 cttggaatttt 417  Q
     | ||||||||    
T  51944085 ttcggaatttt 51944075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 16026012 - 16025907
Alignment:
Q  74 taagatcactcagcaaagagggttgagcacttgtccggcaaagaggattatgtttgggtcaaatcttctctaattaaaaataagaaaggatgatcagcta 173  Q
    |||||||||||| |||| ||| ||||| ||||| ||  |||||||||||  |||| ||| |||||||||||||||| |||||||||||| || |||||||    
T  16026012 taagatcactcaacaaa-aggattgagtacttgccctacaaagaggatt--gtttcggttaaatcttctctaattagaaataagaaagggtggtcagcta 16025916  T
Q  174 taaagtcta 182  Q
     ||| ||||    
T  16025915 caaaatcta 16025907  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 371
Target Start/End: Complemental strand, 46544768 - 46544703
Alignment:
Q  306 gagagtccaccatttttgtcaaacccccagaagagaaaggtaaaatcactcctaggtctttcagca 371  Q
    ||||||||||||| ||||||||||| || | |||||||||||||| ||||||||| || |||||||    
T  46544768 gagagtccaccatatttgtcaaacctcctgtagagaaaggtaaaaccactcctagctccttcagca 46544703  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 185
Target Start/End: Original strand, 47413798 - 47413892
Alignment:
Q  89 aagagggttgagcacttgtccggcaaagaggattatgtttgggtcaaatcttctctaattaaaaataagaaaggatgatcagctataaagtctagtc 185  Q
    |||||| |||||||| |||||  |||||||||||  |||| |||  ||||||||||||||| |||||||||||| || || |||| |||||||||||    
T  47413798 aagaggattgagcacatgtccaacaaagaggatt--gtttcggttgaatcttctctaattagaaataagaaagggtggtcggctacaaagtctagtc 47413892  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 181
Target Start/End: Original strand, 46236399 - 46236482
Alignment:
Q  96 ttgagcacttgtccggcaaagaggattatgtttgggtcaaatcttctctaattaaaaataagaaaggatgatcagctataaagtct 181  Q
    |||||||| ||||| ||||||||||||  |||  |||| || |||||||||||| ||||| |||||| |||||||||| |||||||    
T  46236399 ttgagcacctgtccagcaaagaggatt--gttccggtcgaaacttctctaattagaaataggaaagggtgatcagctacaaagtct 46236482  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 51944370 - 51944317
Alignment:
Q  131 gtcaaatcttctctaattaaaaataagaaaggatgatcagctataaagtctagt 184  Q
    ||||||||||||||||| | |||||||||||| || ||||||| ||||||||||    
T  51944370 gtcaaatcttctctaatcagaaataagaaagggtggtcagctacaaagtctagt 51944317  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 359
Target Start/End: Original strand, 46236628 - 46236676
Alignment:
Q  311 tccaccatttttgtcaaacccccagaagagaaaggtaaaatcactccta 359  Q
    ||||| |||||||| ||||| |||| |||||||||||||||||||||||    
T  46236628 tccacaatttttgtaaaacctccagcagagaaaggtaaaatcactccta 46236676  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 5156717 - 5156674
Alignment:
Q  139 ttctctaattaaaaataagaaaggatgatcagctataaagtcta 182  Q
    ||||||||||| |||||||||||| |||||||||| ||||||||    
T  5156717 ttctctaattagaaataagaaagggtgatcagctacaaagtcta 5156674  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 183
Target Start/End: Complemental strand, 46480313 - 46480221
Alignment:
Q  89 aagagggttgagcacttgtccggcaaagaggattatgtttgggtcaaatcttctctaattaaaaataagaaaggatgatcagctataaagtctag 183  Q
    |||||| |||||||| |||||  |||||| ||||  |||  |||||| ||||||||||| | |||||||||||| || ||||||| |||||||||    
T  46480313 aagaggattgagcacctgtccaacaaagatgatt--gttccggtcaagtcttctctaatcataaataagaaagggtggtcagctacaaagtctag 46480221  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 46491086 - 46491029
Alignment:
Q  219 tggctgcaacagctttagtgcctttttcgtttacttcaataaaacacttctgaaatat 276  Q
    |||||||||||||||  ||||||| ||| ||||| ||||||||| |||| ||||||||    
T  46491086 tggctgcaacagcttcggtgccttcttcatttacatcaataaaagacttgtgaaatat 46491029  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 359
Target Start/End: Complemental strand, 46532215 - 46532162
Alignment:
Q  306 gagagtccaccatttttgtcaaacccccagaagagaaaggtaaaatcactccta 359  Q
    |||||||| |||||||||||||||| |||  ||||||||||||||  |||||||    
T  46532215 gagagtccgccatttttgtcaaacctccaccagagaaaggtaaaacaactccta 46532162  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 46553837 - 46553886
Alignment:
Q  133 caaatcttctctaattaaaaataagaaaggatgatcagctataaagtcta 182  Q
    ||||||||||||||| ||||| |||||||| || ||||||| ||||||||    
T  46553837 caaatcttctctaataaaaaacaagaaagggtggtcagctacaaagtcta 46553886  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 379
Target Start/End: Original strand, 46554013 - 46554086
Alignment:
Q  306 gagagtccaccatttttgtcaaacccccagaagagaaaggtaaaatcactcctaggtctttcagcatatgagaa 379  Q
    ||||||| || |||||||| ||||| |||  ||||||||||||||||||||| |  || |||||||||| ||||    
T  46554013 gagagtctactatttttgttaaacctccattagagaaaggtaaaatcactcccaactccttcagcatattagaa 46554086  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 387
Target Start/End: Complemental strand, 46480085 - 46480005
Alignment:
Q  307 agagtccaccatttttgtcaaacccccagaagagaaaggtaaaatcactcctaggtctttcagcatatgagaagattcaag 387  Q
    ||||| |||||| ||||||| ||| |||  |||||||||||||| ||| ||||| || || ||||||| ||||| ||||||    
T  46480085 agagttcaccatctttgtcagacctccaccagagaaaggtaaaaccacacctagctcctttagcatatcagaagtttcaag 46480005  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 46535418 - 46535370
Alignment:
Q  134 aaatcttctctaattaaaaataagaaaggatgatcagctataaagtcta 182  Q
    ||||||||||| || ||||| ||||||||||| ||||||| ||||||||    
T  46535418 aaatcttctcttatcaaaaacaagaaaggatggtcagctacaaagtcta 46535370  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 414
Target Start/End: Original strand, 46548832 - 46548940
Alignment:
Q  306 gagagtccaccatttttgtcaaacccccagaagagaaaggtaaaatcactcctaggtctttcagcatatgagaagattcaagcttagatgaaaatttgaa 405  Q
    |||||| |||||||||||||||||| |||| | ||||||||| |   |||||||| || || |||| ||  |||| |||||||| | || | | ||||||    
T  46548832 gagagttcaccatttttgtcaaaccaccaggatagaaaggtagatcaactcctagttccttgagcacatttgaagtttcaagctcaaataatattttgaa 46548931  T
Q  406 tcttggaat 414  Q
    |||||||||    
T  46548932 tcttggaat 46548940  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 294 - 359
Target Start/End: Complemental strand, 20144937 - 20144872
Alignment:
Q  294 tttgaccttcaagagagtccaccatttttgtcaaacccccagaagagaaaggtaaaatcactccta 359  Q
    |||||||  |||||||||||||||||||||||||||| |||| | |||| ||||||| ||||||||    
T  20144937 tttgacccgcaagagagtccaccatttttgtcaaacctccaggaaagaatggtaaaaccactccta 20144872  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 359
Target Start/End: Original strand, 20168854 - 20168902
Alignment:
Q  311 tccaccatttttgtcaaacccccagaagagaaaggtaaaatcactccta 359  Q
    |||||||||||||||||||| |||| | |||| ||||||||||||||||    
T  20168854 tccaccatttttgtcaaacctccaggaaagaatggtaaaatcactccta 20168902  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 159
Target Start/End: Original strand, 20168616 - 20168696
Alignment:
Q  76 agatcactcagcaaagagggttgagcacttgtccggcaaagaggattatgtttgggtcaaatcttctctaattaaaaataagaa 159  Q
    |||||||||| ||| |||| ||||||||||| ||| ||||||||||  ||||   ||||||||||| ||||||| |||||||||    
T  20168616 agatcactcatcaa-gaggattgagcacttgcccgacaaagaggat--tgttcccgtcaaatcttccctaattagaaataagaa 20168696  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 159
Target Start/End: Complemental strand, 20359668 - 20359588
Alignment:
Q  76 agatcactcagcaaagagggttgagcacttgtccggcaaagaggattatgtttgggtcaaatcttctctaattaaaaataagaa 159  Q
    |||||||||| ||| |||| ||||||||||| ||| ||||||||||  ||||   ||||||||||| ||||||| |||||||||    
T  20359668 agatcactcatcaa-gaggattgagcacttgcccgacaaagaggat--tgttcccgtcaaatcttccctaattagaaataagaa 20359588  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 330
Target Start/End: Complemental strand, 17736290 - 17736199
Alignment:
Q  239 cctttttcgtttacttcaataaaacacttctgaaatatgctgctaacggagagattttgaccttcaagagagtccaccatttttgtcaaacc 330  Q
    |||| ||| |||| |||||| ||| ||||||||||||||||| |||| || || | ||||| |  | |||||||||||||||||||||||||    
T  17736290 ccttcttcatttaattcaatgaaagacttctgaaatatgctggtaacagaaagttcttgacttataggagagtccaccatttttgtcaaacc 17736199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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