View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2014_high_16 (Length: 458)

Name: NF2014_high_16
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2014_high_16
NF2014_high_16
[»] chr7 (14 HSPs)
chr7 (1-444)||(18997708-18998151)
chr7 (1-444)||(18983062-18983505)
chr7 (1-444)||(18953015-18953458)
chr7 (263-444)||(18988126-18988307)
chr7 (245-313)||(19637571-19637639)
chr7 (63-118)||(19597826-19597881)
chr7 (262-300)||(661023-661061)
chr7 (153-197)||(19357677-19357721)
chr7 (19-106)||(19604591-19604678)
chr7 (152-219)||(19604733-19604800)
chr7 (36-122)||(29881095-29881181)
chr7 (254-311)||(29880927-29880984)
chr7 (255-287)||(22039898-22039930)
chr7 (255-307)||(24391074-24391126)
[»] chr4 (5 HSPs)
chr4 (258-311)||(3565397-3565450)
chr4 (252-310)||(3557380-3557438)
chr4 (258-306)||(1686649-1686697)
chr4 (247-285)||(35766701-35766739)
chr4 (254-311)||(3561318-3561375)
[»] scaffold0097 (2 HSPs)
scaffold0097 (254-310)||(16711-16767)
scaffold0097 (67-116)||(16548-16597)
[»] chr2 (4 HSPs)
chr2 (254-310)||(20712872-20712928)
chr2 (67-116)||(20712709-20712758)
chr2 (252-313)||(20975215-20975276)
chr2 (67-120)||(20967541-20967594)
[»] scaffold0464 (1 HSPs)
scaffold0464 (153-191)||(7837-7875)
[»] chr3 (2 HSPs)
chr3 (153-191)||(12735055-12735093)
chr3 (153-193)||(32579121-32579161)
[»] chr5 (1 HSPs)
chr5 (61-122)||(24331069-24331130)
[»] chr1 (2 HSPs)
chr1 (61-122)||(21855553-21855614)
chr1 (258-307)||(39379425-39379474)
[»] chr6 (1 HSPs)
chr6 (49-109)||(20770502-20770562)


Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 18997708 - 18998151
Alignment:
Q  1 tcaagaaagatagagtgggctcaacagacgtcacttcatcaaaaccaagagggagtagaaattgattgtatgtctccgtcctcaaatcaagggagatgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18997708 tcaagaaagatagagtgggctcaacagacgtcacttcatcaaaaccaagagggagtagaaattgattgtatgtctccgtcctcaaatcaagggagatgat 18997807  T
Q  101 cacaaattggtcaatagtaatagatttcaattcaaaattacatgggcatgcgtttcgaatggccaaccagttaacagtgccactcacatacacgccagca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18997808 cacaaattggtcaatagtaatagatttcaattcaaaattacatgggcacgcgtttcgaatggccaaccaattaacagtgccactcacatacacgccagca 18997907  T
Q  201 ttaatacccagatgagtatggggactagtggaaatatccataaaaggagccacaggaaaactttgaatatgtctccaaacattatcgcctaaattgaaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18997908 ttaatacccagatgagtatggggactagtggaaatatccataaaaggagccacaggaaaactttgaatatgtctccaaacattatcgcctaaattgaaaa 18998007  T
Q  301 ctctcacctcgttgatcttttcatagtacgccacaatcttataatcgttaattgaatcatcataaccaaaccaaaaccgccaaagtgtatagagtgaccg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18998008 ctctcacctcgttgatcttttcatagtacgccacaatcttataatcgttaattgaatcatcataaccaaaccaaaaccgccaaagtgtatagagtgaccg 18998107  T
Q  401 tgtgttaatcatcttatcatgaccacacttacgaaggtgaaact 444  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  18998108 tgtgtttatcatcttatcacgaccacacttacgaaggtgaaact 18998151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 18983062 - 18983505
Alignment:
Q  1 tcaagaaagatagagtgggctcaacagacgtcacttcatcaaaaccaagagggagtagaaattgattgtatgtctccgtcctcaaatcaagggagatgat 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18983062 tcaagaaagatagggtgggctcaacagacgtcacttcatcaaaaccaagagggagtagaaattgattgtatgtctccgtcctcaaatcaagggagatgat 18983161  T
Q  101 cacaaattggtcaatagtaatagatttcaattcaaaattacatgggcatgcgtttcgaatggccaaccagttaacagtgccactcacatacacgccagca 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18983162 cacgaattggtcaatagtaatagatttcaattcaaaattacatggacacgcgtttcgaatggccaaccagttaacagtgccactcacatacacgccagca 18983261  T
Q  201 ttaatacccagatgagtatggggactagtggaaatatccataaaaggagccacaggaaaactttgaatatgtctccaaacattatcgcctaaattgaaaa 300  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18983262 ttaatacccagatgagtatggggacaagtggaaatatccataaaaggagccacaggaaaactttgaatatgtctccaaacattatcgcctaaattgaaaa 18983361  T
Q  301 ctctcacctcgttgatcttttcatagtacgccacaatcttataatcgttaattgaatcatcataaccaaaccaaaaccgccaaagtgtatagagtgaccg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18983362 ctctcacctcgttgatcttttcatagtacgccacaatcttataatcgttaattgaatcatcataaccaaaccaaaaccgccaaagtgtatagagtgaccg 18983461  T
Q  401 tgtgttaatcatcttatcatgaccacacttacgaaggtgaaact 444  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  18983462 tgtgtttatcatcttatcacgaccacacttacgaaggtgaaact 18983505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 18953015 - 18953458
Alignment:
Q  1 tcaagaaagatagagtgggctcaacagacgtcacttcatcaaaaccaagagggagtagaaattgattgtatgtctccgtcctcaaatcaagggagatgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18953015 tcaagaaagatagagtgggctcaacagacgtcacttcatcaaaaccaagagggagtagaaattgattgtatgtctccgtcctcaaatcaagggagatgat 18953114  T
Q  101 cacaaattggtcaatagtaatagatttcaattcaaaattacatgggcatgcgtttcgaatggccaaccagttaacagtgccactcacatacacgccagca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18953115 cacaaattggtcaatagtaatagatttcaattcaaaattacatgggcatgcgtttcgaatggccaaccagttaacagtgccactcacatacacgccagca 18953214  T
Q  201 ttaatacccagatgagtatggggactagtggaaatatccataaaaggagccacaggaaaactttgaatatgtctccaaacattatcgcctaaattgaaaa 300  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18953215 ttaatacccagatgagtatggggacaagtggaaatatccataaaaggagccacaggaaaactttgaatatgtctccaaacattatcgccaaaattgaaaa 18953314  T
Q  301 ctctcacctcgttgatcttttcatagtacgccacaatcttataatcgttaattgaatcatcataaccaaaccaaaaccgccaaagtgtatagagtgaccg 400  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  18953315 ctctcacctcgttgatcttttcatagaacgccacaatcttataatcgttaattgaatcatcataaccaaaccaaaaccgccaaagtgtatagagtgactg 18953414  T
Q  401 tgtgttaatcatcttatcatgaccacacttacgaaggtgaaact 444  Q
    |||||| ||||||| || | ||||||||||||||||||||||||    
T  18953415 tgtgtttatcatctcataacgaccacacttacgaaggtgaaact 18953458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 263 - 444
Target Start/End: Original strand, 18988126 - 18988307
Alignment:
Q  263 ttgaatatgtctccaaacattatcgcctaaattgaaaactctcacctcgttgatcttttcatagtacgccacaatcttataatcgttaattgaatcatca 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18988126 ttgaatatgtctccaaacattatcgcctaaattgaaaactctcacctcgttgatcttttcatagtacgccacaatcttataatcgttaattgaatcatca 18988225  T
Q  363 taaccaaaccaaaaccgccaaagtgtatagagtgaccgtgtgttaatcatcttatcatgaccacacttacgaaggtgaaact 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18988226 taaccaaaccaaaaccgccaaagtgtatagagtgaccgtgtgttaatcatcttatcacgaccacacttacgaaggtgaaact 18988307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 19637571 - 19637639
Alignment:
Q  245 aggagccacaggaaaactttgaatatgtctccaaacattatcgcctaaattgaaaactctcacctcgtt 313  Q
    |||| ||| ||||||||||||||||| ||||||||| ||||| || ||| | |||||||||||||||||    
T  19637571 aggaaccataggaaaactttgaatatttctccaaactttatcaccaaaactaaaaactctcacctcgtt 19637639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 118
Target Start/End: Original strand, 19597826 - 19597881
Alignment:
Q  63 tgattgtatgtctccgtcctcaaatcaagggagatgatcacaaattggtcaatagt 118  Q
    |||| ||||||||||||  ||||||||||  |||||||||||||||||||||||||    
T  19597826 tgatggtatgtctccgtaatcaaatcaagcaagatgatcacaaattggtcaatagt 19597881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 300
Target Start/End: Original strand, 661023 - 661061
Alignment:
Q  262 tttgaatatgtctccaaacattatcgcctaaattgaaaa 300  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  661023 tttgaatatttctccaaacattatcgcctaaattgaaaa 661061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 19357721 - 19357677
Alignment:
Q  153 tttcgaatggccaaccagttaacagtgccactcacatacacgcca 197  Q
    |||||||| ||||||||||||| |||||| |||||||||||||||    
T  19357721 tttcgaatagccaaccagttaatagtgcctctcacatacacgcca 19357677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 19604591 - 19604678
Alignment:
Q  19 gctcaacagacgtcacttcatcaaaaccaagagggagtagaaattgattgtatgtctccgtcctcaaatcaagggagatgatcacaaa 106  Q
    |||||||||  | ||||| |||||||||| |||| ||  ||| ||||  ||||||||| || |||||||||||||||||||| |||||    
T  19604591 gctcaacaggtggcactttatcaaaaccacgaggcagacgaagttgacggtatgtctcagtactcaaatcaagggagatgataacaaa 19604678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 219
Target Start/End: Original strand, 19604733 - 19604800
Alignment:
Q  152 gtttcgaatggccaaccagttaacagtgccactcacatacacgccagcattaatacccagatgagtat 219  Q
    |||| ||||| |||||||||||| ||| |||||||||||||| |||  ||||||| ||| ||||||||    
T  19604733 gttttgaatgaccaaccagttaagagtaccactcacatacacaccattattaatagccatatgagtat 19604800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 29881181 - 29881095
Alignment:
Q  36 tcatcaaaaccaagagggagtagaaattgattgtatgtctccgtcctcaaatcaagggagatgatcacaaattggtcaatagtaata 122  Q
    ||||||||||   |||| ||| || |||||||||||||||| |||| ||||||||| || |  || ||||||||||||| |||||||    
T  29881181 tcatcaaaactcggaggcagtcgatattgattgtatgtctcagtccccaaatcaagtgaaacaataacaaattggtcaacagtaata 29881095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 311
Target Start/End: Complemental strand, 29880984 - 29880927
Alignment:
Q  254 aggaaaactttgaatatgtctccaaacattatcgcctaaattgaaaactctcacctcg 311  Q
    ||||||||||| ||||| ||||||||||| ||| || | ||||| |||||||||||||    
T  29880984 aggaaaactttcaatatttctccaaacatcatcaccaagattgagaactctcacctcg 29880927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 22039930 - 22039898
Alignment:
Q  255 ggaaaactttgaatatgtctccaaacattatcg 287  Q
    |||||||||||||||| ||||||||||||||||    
T  22039930 ggaaaactttgaatatttctccaaacattatcg 22039898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 24391126 - 24391074
Alignment:
Q  255 ggaaaactttgaatatgtctccaaacattatcgcctaaattgaaaactctcac 307  Q
    |||||||||||||||| |||||||| |||||| || ||| | |||||||||||    
T  24391126 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaactctcac 24391074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 3565450 - 3565397
Alignment:
Q  258 aaactttgaatatgtctccaaacattatcgcctaaattgaaaactctcacctcg 311  Q
    ||||||| ||||| ||||||||||||||| |||||| |||||||||||||||||    
T  3565450 aaactttcaatatttctccaaacattatcacctaaactgaaaactctcacctcg 3565397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 3557438 - 3557380
Alignment:
Q  252 acaggaaaactttgaatatgtctccaaacattatcgcctaaattgaaaactctcacctc 310  Q
    ||||| ||||||| ||||| ||||||||||||||| |||||| |||||||||| |||||    
T  3557438 acagggaaactttcaatatttctccaaacattatcacctaaactgaaaactctaacctc 3557380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 1686649 - 1686697
Alignment:
Q  258 aaactttgaatatgtctccaaacattatcgcctaaattgaaaactctca 306  Q
    ||||||| ||||| ||||||||||||||| |||||| ||||||||||||    
T  1686649 aaactttcaatatttctccaaacattatcacctaaactgaaaactctca 1686697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 285
Target Start/End: Complemental strand, 35766739 - 35766701
Alignment:
Q  247 gagccacaggaaaactttgaatatgtctccaaacattat 285  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  35766739 gagccacaggaaaactttgaatgcgtctccaaacattat 35766701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 3561318 - 3561375
Alignment:
Q  254 aggaaaactttgaatatgtctccaaacattatcgcctaaattgaaaactctcacctcg 311  Q
    ||||||||||| ||||| ||||||||||||||| || |||  |||| |||||||||||    
T  3561318 aggaaaactttcaatatttctccaaacattatcaccaaaaccgaaagctctcacctcg 3561375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 16711 - 16767
Alignment:
Q  254 aggaaaactttgaatatgtctccaaacattatcgcctaaattgaaaactctcacctc 310  Q
    |||||||| |||||||| |||||||||||||||||| ||| |||||||||| |||||    
T  16711 aggaaaacattgaatatttctccaaacattatcgcccaaagtgaaaactctgacctc 16767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 16548 - 16597
Alignment:
Q  67 tgtatgtctccgtcctcaaatcaagggagatgatcacaaattggtcaata 116  Q
    ||||||||||| ||| |||||| |||||||||||||||||||| ||||||    
T  16548 tgtatgtctccatccccaaatcgagggagatgatcacaaattgttcaata 16597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 20712872 - 20712928
Alignment:
Q  254 aggaaaactttgaatatgtctccaaacattatcgcctaaattgaaaactctcacctc 310  Q
    |||||||| |||||||| |||||||||||||||||| ||| |||||||||| |||||    
T  20712872 aggaaaacattgaatatttctccaaacattatcgcccaaagtgaaaactctgacctc 20712928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 20712709 - 20712758
Alignment:
Q  67 tgtatgtctccgtcctcaaatcaagggagatgatcacaaattggtcaata 116  Q
    ||||||||||| ||| |||||| |||||||||||||||||||| ||||||    
T  20712709 tgtatgtctccatccccaaatcgagggagatgatcacaaattgttcaata 20712758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 252 - 313
Target Start/End: Complemental strand, 20975276 - 20975215
Alignment:
Q  252 acaggaaaactttgaatatgtctccaaacattatcgcctaaattgaaaactctcacctcgtt 313  Q
    ||||||||||||||||||| |||||||| ||| ||||| ||| |||||||| | ||||||||    
T  20975276 acaggaaaactttgaatatttctccaaatattttcgcccaaagtgaaaacttttacctcgtt 20975215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 20967594 - 20967541
Alignment:
Q  67 tgtatgtctccgtcctcaaatcaagggagatgatcacaaattggtcaatagtaa 120  Q
    |||| ||||| |||| |||||||||||| |||||||||||||| |||| |||||    
T  20967594 tgtaggtctctgtccccaaatcaagggaaatgatcacaaattgctcaacagtaa 20967541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 191
Target Start/End: Complemental strand, 7875 - 7837
Alignment:
Q  153 tttcgaatggccaaccagttaacagtgccactcacatac 191  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  7875 tttcgaatagccaaccagttaacagtgccactcacatac 7837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 12735055 - 12735093
Alignment:
Q  153 tttcgaatggccaaccagttaacagtgccactcacatac 191  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  12735055 tttcgaatagccaaccagttaacagtgccacttacatac 12735093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 32579121 - 32579161
Alignment:
Q  153 tttcgaatggccaaccagttaacagtgccactcacatacac 193  Q
    |||||||| |||||||| |||| ||||||||||||||||||    
T  32579121 tttcgaatagccaaccaattaatagtgccactcacatacac 32579161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 24331069 - 24331130
Alignment:
Q  61 attgattgtatgtctccgtcctcaaatcaagggagatgatcacaaattggtcaatagtaata 122  Q
    ||||||||||||||||||||  ||||||||| || |  |||||||| ||||||| |||||||    
T  24331069 attgattgtatgtctccgtctccaaatcaagagaaacaatcacaaactggtcaacagtaata 24331130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 21855553 - 21855614
Alignment:
Q  61 attgattgtatgtctccgtcctcaaatcaagggagatgatcacaaattggtcaatagtaata 122  Q
    ||||||||||||||||||||  ||||||||| || |  |||||||| ||||||| |||||||    
T  21855553 attgattgtatgtctccgtctccaaatcaagagaaacaatcacaaactggtcaacagtaata 21855614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 307
Target Start/End: Original strand, 39379425 - 39379474
Alignment:
Q  258 aaactttgaatatgtctccaaacattatcgcctaaattgaaaactctcac 307  Q
    ||||||| ||||| ||||||||||||||| || ||| |||||||||||||    
T  39379425 aaactttcaatatttctccaaacattatcacccaaactgaaaactctcac 39379474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 20770562 - 20770502
Alignment:
Q  49 gagggagtagaaattgattgtatgtctccgtcctcaaatcaagggagatgatcacaaattg 109  Q
    |||||||||  || || |||||||||||  ||  |||||||||||||||||||||||||||    
T  20770562 gagggagtaacaactgtttgtatgtctctttcgccaaatcaagggagatgatcacaaattg 20770502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University