View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2014_high_19 (Length: 446)

Name: NF2014_high_19
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2014_high_19
NF2014_high_19
[»] chr4 (6 HSPs)
chr4 (28-425)||(48505482-48505878)
chr4 (27-284)||(53170924-53171180)
chr4 (115-264)||(25707015-25707165)
chr4 (44-284)||(16957979-16958216)
chr4 (23-293)||(56461530-56461799)
chr4 (62-160)||(32335312-32335409)
[»] chr5 (7 HSPs)
chr5 (27-276)||(15291456-15291704)
chr5 (27-284)||(27337119-27337375)
chr5 (64-191)||(3113684-3113811)
chr5 (27-257)||(433718-433947)
chr5 (62-160)||(25662866-25662964)
chr5 (61-159)||(32269343-32269441)
chr5 (52-107)||(35456213-35456267)
[»] chr1 (8 HSPs)
chr1 (64-284)||(19035889-19036109)
chr1 (62-273)||(37200715-37200926)
chr1 (23-284)||(38732005-38732265)
chr1 (62-284)||(28040553-28040774)
chr1 (62-237)||(7794387-7794562)
chr1 (62-160)||(22375179-22375276)
chr1 (61-153)||(34645025-34645117)
chr1 (13-159)||(35386866-35387011)
[»] chr8 (9 HSPs)
chr8 (28-284)||(37517516-37517771)
chr8 (44-284)||(25021227-25021468)
chr8 (62-276)||(24125488-24125701)
chr8 (62-191)||(42921648-42921777)
chr8 (27-284)||(500653-500909)
chr8 (61-173)||(4006976-4007091)
chr8 (27-160)||(39435093-39435225)
chr8 (60-133)||(10556104-10556177)
chr8 (70-191)||(10190011-10190132)
[»] chr2 (11 HSPs)
chr2 (62-284)||(9684840-9685062)
chr2 (62-174)||(4412601-4412713)
chr2 (62-257)||(19161278-19161473)
chr2 (62-284)||(17345098-17345320)
chr2 (36-184)||(41867433-41867580)
chr2 (77-292)||(18744435-18744650)
chr2 (62-184)||(20142265-20142387)
chr2 (61-284)||(28225459-28225681)
chr2 (23-184)||(44686839-44686999)
chr2 (127-284)||(40856896-40857053)
chr2 (198-283)||(8588681-8588766)
[»] chr3 (8 HSPs)
chr3 (64-293)||(49018414-49018643)
chr3 (62-223)||(53786168-53786329)
chr3 (62-284)||(29862257-29862483)
chr3 (68-275)||(52411336-52411543)
chr3 (42-124)||(7501724-7501805)
chr3 (72-160)||(35236598-35236686)
chr3 (62-109)||(52741127-52741174)
chr3 (36-97)||(37992751-37992811)
[»] scaffold0186 (1 HSPs)
scaffold0186 (62-292)||(20181-20415)
[»] chr7 (7 HSPs)
chr7 (27-284)||(5827680-5827936)
chr7 (62-257)||(47679584-47679776)
chr7 (62-257)||(32585607-32585802)
chr7 (62-162)||(24528050-24528150)
chr7 (43-150)||(4501700-4501806)
chr7 (28-86)||(45613465-45613522)
chr7 (62-106)||(10905563-10905607)
[»] chr6 (14 HSPs)
chr6 (61-186)||(29337609-29337734)
chr6 (23-139)||(45239-45354)
chr6 (61-186)||(23910813-23910938)
chr6 (68-186)||(8374821-8374939)
chr6 (62-284)||(32120389-32120610)
chr6 (62-284)||(34304957-34305179)
chr6 (62-139)||(4206166-4206243)
chr6 (216-284)||(32116249-32116317)
chr6 (210-284)||(45115-45189)
chr6 (68-153)||(22986385-22986470)
chr6 (68-153)||(23801924-23802009)
chr6 (201-284)||(10402328-10402410)
chr6 (50-284)||(7199999-7200231)
chr6 (23-107)||(32116111-32116194)


Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 28 - 425
Target Start/End: Complemental strand, 48505878 - 48505482
Alignment:
Q  28 cttacaataaacagaacacacatcatcaatataaaaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatc 127  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  48505878 cttacaataaacagaacacacatcatcaatatgaaa-tagtggaatcataaggcgatatctaaggataatacgatactccaccgataacatatgttgatc 48505780  T
Q  128 taactcatcaatatggatagctagaagaaaatcctaatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaact 227  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  48505779 taacccatcaatatggatagctagaaaaaaatcctaatcatgtgttgtttgcaaacaccttaaatttattttatatctagtagtcatatcaaacttaact 48505680  T
Q  228 ttcatattttaaatatttttactaaaaagaacattcgtcaaaacatgttgtactttacgagagacacgattcttccaaatacaactactatcatcaaaat 327  Q
    ||||||| ||||||||||||||||||||||||||||||||||| || |||||||||| |||||||| | |||||||||||||||||||||||||||||||    
T  48505679 ttcatatcttaaatatttttactaaaaagaacattcgtcaaaatatattgtactttatgagagacatggttcttccaaatacaactactatcatcaaaat 48505580  T
Q  328 ctaaaattgtaccgcaaaatccctccaaaatattatcaaaattcgcatccgaattcaaatatttcaaccgatttaaaatagctagacagtccgaaatc 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  48505579 ctaaaattgtaccgcaaaatccctccaaaatattatcaaaattcgcatccaaattcaaatatttcaaccgatttaaaatagctagacagtccgaaatc 48505482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 27 - 284
Target Start/End: Original strand, 53170924 - 53171180
Alignment:
Q  27 ccttacaataaacagaacacacatcatcaatataaaaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgat 126  Q
    |||||| | ||||||  ||||| ||||||||| |||| |||||||||| ||||| ||||||||| |||| || |||||||||| ||| | |||||||||     
T  53170924 ccttacgacaaacagggcacacctcatcaatagaaaa-tagtggaatcgtaaggtgatatctaaagatagtacgatactccactgatgatatatgctgaa 53171022  T
Q  127 ctaactcatcaatatggatagctagaagaaaatcctaatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaac 226  Q
    ||||| |||||||  ||||||||||||||||||||| | |||||| || ||||||||| |  ||| ||||||| | ||| || || || |||||||||||    
T  53171023 ctaacccatcaattaggatagctagaagaaaatcctgagcatgtgctgcttgcaaacatccaaaaattgttttctttctcgtggttatgtcaaacttaac 53171122  T
Q  227 tttcatattttaaatatttttactaaaaagaacattcgtcaaaacatgttgtacttta 284  Q
    || |||||||| || | |||||||||||||| || ||| ||||||||||||| |||||    
T  53171123 ttccatattttgaacacttttactaaaaagagcactcgccaaaacatgttgtgcttta 53171180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 115 - 264
Target Start/End: Original strand, 25707015 - 25707165
Alignment:
Q  115 acatatgctgatctaactcatcaatatgga-tagctagaagaaaatcctaatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtca 213  Q
    ||||||||||| ||||| |||||||  ||  |||||||||||||||||| | |||||| || ||||||||| | ||||  |   || ||||||||| | |    
T  25707015 acatatgctgacctaacccatcaatcgggtgtagctagaagaaaatcctcagcatgtgctgcttgcaaacatcctaaaacttccttctgtctagtaatta 25707114  T
Q  214 tatcaaacttaactttcatattttaaatatttttactaaaaagaacattcg 264  Q
    | ||||||||||||| ||||||||||| | |||||||||||||| ||||||    
T  25707115 tgtcaaacttaacttccatattttaaacacttttactaaaaagatcattcg 25707165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 284
Target Start/End: Original strand, 16957979 - 16958216
Alignment:
Q  44 cacacatcatcaatataaaaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatgg 143  Q
    ||||| ||||||||| |||| ||||||||||||||||| ||||||||||||| ||   || ||||| | | ||||||||||  || || |||||||  ||    
T  16957979 cacacctcatcaatagaaaa-tagtggaatcataaggc-atatctaaggatagtacagtaatccactggtgacatatgctggccttacccatcaatgagg 16958076  T
Q  144 atagctagaagaaaatcctaatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaactttcatattttaaatat 243  Q
    |||||||||||||||||   | |||||| || ||||||| | | |||| |||  || ||||| ||||| || ||||||||||||| |||||  | |  |     
T  16958077 atagctagaagaaaatctagagcatgtgctgcttgcaaatatcctaaaattgccttctgtctcgtagttatgtcaaacttaacttccatatcgtgagcac 16958176  T
Q  244 ttttactaaaaagaacattcgtcaaaacatgttgtacttta 284  Q
    ||||||| |||||| || ||| ||||||||||||| |||||    
T  16958177 ttttactcaaaagagcactcg-caaaacatgttgtgcttta 16958216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 23 - 293
Target Start/End: Complemental strand, 56461799 - 56461530
Alignment:
Q  23 cacaccttacaataaacagaacacacatcatcaatataaaaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgc 122  Q
    |||||||||| | ||||||  ||||| ||||||||| |||| ||||||||||||||||  ||||||||||||  || |||||||||  | | | |||||     
T  56461799 cacaccttacgaaaaacagggcacacctcatcaatagaaaa-tagtggaatcataaggttatatctaaggatggtacgatactccattggtgatatatga 56461701  T
Q  123 tgatctaactcatcaatatggatagctagaagaaaatcctaatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaact 222  Q
    ||| |||||  ||||||   ||||||||||| |||||| | | |||||| |||||||||||| | ||||  |   || |||||||| ||||| |  ||||    
T  56461700 tgacctaaccaatcaattatgatagctagaaaaaaatcttgagcatgtgctgtttgcaaacatcctaaaacttccttctgtctagtggtcatgt-gaact 56461602  T
Q  223 taactttcatattttaaatatttttactaaaaagaa-cattcgtcaaaacatgttgtactttacgagagaca 293  Q
    |||||| ||||| || || | |||||||||||| || || ||| ||||| ||||||| ||||| ||| ||||    
T  56461601 taacttccatatcttgaacacttttactaaaaaaaagcactcgccaaaatatgttgtgctttaggagggaca 56461530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 62 - 160
Target Start/End: Original strand, 32335312 - 32335409
Alignment:
Q  62 aaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatc 160  Q
    ||||| |||||||||| ||||||||||||| ||| |||| ||||||||  || ||||||| ||| ||||  |||||||| |||||||||||||||||||    
T  32335312 aaatattggaatcatacggcgatatctaag-atagtatggtactccactaatgacatatgatgacctaatccatcaatagggatagctagaagaaaatc 32335409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 27 - 276
Target Start/End: Complemental strand, 15291704 - 15291456
Alignment:
Q  27 ccttacaataaacagaacacacatcatcaatataaaaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgat 126  Q
    |||||| |||||||  |||||| ||||||||| |||| ||||||||||||| | ||||||||||||||| || |||||||||| | | |||||||||||     
T  15291704 ccttacgataaacatgacacacctcatcaatagaaaa-tagtggaatcatacgacgatatctaaggatagtacgatactccactggtgacatatgctgac 15291606  T
Q  127 ctaactcatcaatatggatagctagaagaaaatcctaatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaac 226  Q
    ||||| |||||||  ||||||||||||||||||||  | |||||| || ||||||||| |  ||| |||  || ||||| || ||||| |||||||||||    
T  15291605 ctaacccatcaattgggatagctagaagaaaatcccgagcatgtgctgcttgcaaacatcccaaaattgccttctgtctcgtggtcatgtcaaacttaac 15291506  T
Q  227 tttcatattttaaatatttttactaaaaagaacattcgtcaaaacatgtt 276  Q
    || ||||| || || | |||||||||||||| || |||||||||||||||    
T  15291505 ttccatatcttgaacacttttactaaaaagagcactcgtcaaaacatgtt 15291456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 284
Target Start/End: Original strand, 27337119 - 27337375
Alignment:
Q  27 ccttacaataaacagaacacacatcatcaatataaaaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgat 126  Q
    |||||| | ||||||  ||||| |||||||||  |||| |||||||||||||| ||||||| ||||||| || | ||||| || | | ||||||||| |     
T  27337119 ccttacgacaaacagggcacacctcatcaataggaaaa-agtggaatcataagacgatatcgaaggatagtacggtactcaactggtgacatatgctaac 27337217  T
Q  127 ctaactcatcaatatggatagctagaagaaaatcctaatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaac 226  Q
    ||||| |||||||  ||||||||| ||||||||| | | |||||| || ||||||||| |  |||  ||  || |||||||| ||||| |||||||||||    
T  27337218 ctaacccatcaattgggatagctaaaagaaaatcttgagcatgtggtggttgcaaacatcccaaaactgccttctgtctagtggtcatgtcaaacttaac 27337317  T
Q  227 tttcatattttaaatatttttactaaaaagaacattcgtcaaaacatgttgtacttta 284  Q
    || ||||| || || |  ||||||||||||| || ||| ||||||||||||| |||||    
T  27337318 ttccatatcttgaacaactttactaaaaagagcactcgccaaaacatgttgtgcttta 27337375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 64 - 191
Target Start/End: Complemental strand, 3113811 - 3113684
Alignment:
Q  64 atagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatccta 163  Q
    |||||||||||||||||| ||||||||||||| || ||||||||||  || || |||||||| |||| ||||||||  |||||||||| |||||||| |     
T  3113811 atagtggaatcataaggcaatatctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggagaaaatcttg 3113712  T
Q  164 atcatgtgttgtttgcaaacaccttaaa 191  Q
    | |||||| || || |||||||| ||||    
T  3113711 agcatgtgctgcttccaaacaccctaaa 3113684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 257
Target Start/End: Original strand, 433718 - 433947
Alignment:
Q  27 ccttacaataaacagaacacacatcatcaatataaaaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgat 126  Q
    |||||| | ||||||  ||||| |||||||||  |||| |||||||||||||| ||||||| ||||||| |  ||||||| |  | | ||||||||||      
T  433718 ccttacgacaaacagtgcacacctcatcaataggaaaa-agtggaatcataagacgatatcgaaggatagtccgatactcaattggtgacatatgctggc 433816  T
Q  127 ctaactcatcaatatggatagctagaagaaaatcctaatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaac 226  Q
    ||||| |||||||  ||||||||||||||||||| | | |||||| || ||||||||| | ||||  |   || || ||||| ||||| ||||||||||     
T  433817 ctaacccatcaattgggatagctagaagaaaatcttgagcatgtggtgcttgcaaacatcctaaaactaccttctgcctagtggtcatttcaaacttaag 433916  T
Q  227 tttcatattttaaatatttttactaaaaaga 257  Q
    || ||||| || || |  |||||||||||||    
T  433917 ttccatatcttgaacaactttactaaaaaga 433947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 62 - 160
Target Start/End: Complemental strand, 25662964 - 25662866
Alignment:
Q  62 aaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatc 160  Q
    |||||||||||||||||| ||||||| ||||||| || | || ||||| | | ||||||||||| | ||| |||||||  |||||||||||||||||||    
T  25662964 aaatagtggaatcataagacgatatcgaaggatagtacggtattccactggtgacatatgctgacccaacccatcaattgggatagctagaagaaaatc 25662866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 61 - 159
Target Start/End: Complemental strand, 32269441 - 32269343
Alignment:
Q  61 aaaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaat 159  Q
    ||||||||||||||||||| | ||||| ||||||| ||| ||||| |||   |||||||| |||| ||||| |||||||  ||||||||| ||||||||    
T  32269441 aaaatagtggaatcataagacaatatccaaggatagtataatacttcactagtaacatatcctgacctaacccatcaatcaggatagctaaaagaaaat 32269343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 35456213 - 35456267
Alignment:
Q  52 atcaatataaaaatagtggaatcataaggcgatatctaaggataatatgatactcc 107  Q
    |||||||||||| |||||||||||||||| |||||||||||||| |||| ||||||    
T  35456213 atcaatataaaa-tagtggaatcataaggtgatatctaaggatagtatggtactcc 35456267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 64 - 284
Target Start/End: Original strand, 19035889 - 19036109
Alignment:
Q  64 atagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatccta 163  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| | | ||||||| ||| |||||||||||||  ||||||||||||||||||||      
T  19035889 atagtggaatcataaggcgatatctaaggatagtatgatactccactggtgacatatgttgacctaactcatcaatcgggatagctagaagaaaatcccg 19035988  T
Q  164 atcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaactttcatattttaaatatttttactaaaaagaacattc 263  Q
    | |||||| || ||||| ||| |  ||| |||  || ||||| || ||||| ||||||||||||| |||||  | || | |||||||||||||| || ||    
T  19035989 agcatgtgctgcttgcagacatccaaaaattgccttttgtctcgtggtcatgtcaaacttaacttccatatcctgaacacttttactaaaaagagcactc 19036088  T
Q  264 gtcaaaacatgttgtacttta 284  Q
    | ||||||||||||| |||||    
T  19036089 gccaaaacatgttgtgcttta 19036109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 62 - 273
Target Start/End: Original strand, 37200715 - 37200926
Alignment:
Q  62 aaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatcc 161  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||   | ||||||||||| ||||| |||| |||||||||| || ||||||||      
T  37200715 aaatagtggaattataaggcgatatctaaggatagtatgatactccactagtgacatatgctgacctaacccatccatatggatagttaaaagaaaatga 37200814  T
Q  162 taatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaactttcatattttaaatatttttactaaaaagaacat 261  Q
    | | |||||| |  |||||||||||||||| |||| |||||  |||| ||||| ||||| ||||||| ||||| || || | |||| |||||||| |||     
T  37200815 tgagcatgtgctacttgcaaacaccttaaaattgtcttatgcgtagtggtcatgtcaaatttaacttccatatcttgaacacttttcctaaaaaggacac 37200914  T
Q  262 tcgtcaaaacat 273  Q
    ||  ||||||||    
T  37200915 tcaccaaaacat 37200926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 23 - 284
Target Start/End: Original strand, 38732005 - 38732265
Alignment:
Q  23 cacaccttacaataaacagaacacacatcatcaatataaaaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgc 122  Q
    |||||||||| | ||||| |||| |||||||||| |  ||| ||||||||||||||||||||||||||||||| || | |||||||| ||| ||||||||    
T  38732005 cacaccttacgaaaaacaaaacatacatcatcaacaggaaa-tagtggaatcataaggcgatatctaaggatagtacggtactccactgatgacatatgc 38732103  T
Q  123 tgatctaactcatcaatatggatagctagaagaaaatcctaatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaact 222  Q
    |||   ||| |||| ||  ||||||||| ||||||||| | |  || ||||| || |||||| | ||||  ||  || ||||||||  |||| |||||||    
T  38732104 tgacacaacccatccatcaggatagctacaagaaaatcatgagaatttgttgctttcaaacatcctaaaagtgacttctgtctagtgatcatgtcaaact 38732203  T
Q  223 taactttcatattttaaatatttttactaaaaagaacattcgtcaaaacatgttgtacttta 284  Q
    |||||| ||||| || || | ||||||||||| | ||| |||||||||| |||||| |||||    
T  38732204 taacttccatatcttgaacacttttactaaaatggacaatcgtcaaaacttgttgtgcttta 38732265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 62 - 284
Target Start/End: Complemental strand, 28040774 - 28040553
Alignment:
Q  62 aaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatcc 161  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||| | | ||||||| ||| |||||  ||||||  |||||||||||||||||||     
T  28040774 aaataatggaatcataaggcgatatctaaggatagtatgatactccactggtgacatatgttgacctaaccaatcaatcgggatagctagaagaaaatct 28040675  T
Q  162 taatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaactttcatattttaaatatttttactaaaaagaacat 261  Q
    | | |||||  || ||||||||| |  ||| |||  || ||||| || ||||| |||||||||| || |||||  |  | |||||||||||||||| ||     
T  28040674 tgagcatgttctgcttgcaaacatccaaaaattgccttctgtctcgtggtcatgtcaaacttaatttccatatcct-gacatttttactaaaaagagcac 28040576  T
Q  262 tcgtcaaaacatgttgtacttta 284  Q
    |||  |||||||||||| |||||    
T  28040575 tcgcaaaaacatgttgtgcttta 28040553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 62 - 237
Target Start/End: Complemental strand, 7794562 - 7794387
Alignment:
Q  62 aaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatcc 161  Q
    ||||| |||||||||||||||||||| |||||||  ||| |||||||| | | | ||||| ||| ||||| |||||||| ||||||||| |||||||||     
T  7794562 aaataatggaatcataaggcgatatcaaaggatagcatggtactccactggtgatatatgttgacctaacccatcaataaggatagctataagaaaatca 7794463  T
Q  162 taatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaactttcatatttt 237  Q
    | | |||||| |||||   ||| || ||||  | | || |||||||| ||||| | ||||||||||| ||||||||    
T  7794462 tgagcatgtgatgtttttgaacgccctaaaactatcttctgtctagtggtcatgtaaaacttaacttccatatttt 7794387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 62 - 160
Target Start/End: Original strand, 22375179 - 22375276
Alignment:
Q  62 aaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatc 160  Q
    ||||||| |||||||||||||||||||||||||| || | |||||| || || ||||||| ||| |||||  ||||||||| |||||||||||||||||    
T  22375179 aaatagtagaatcataaggcgatatctaaggatagtacgttactcc-cctatgacatatgttgacctaaccgatcaatatgaatagctagaagaaaatc 22375276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 153
Target Start/End: Original strand, 34645025 - 34645117
Alignment:
Q  61 aaaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaa 153  Q
    ||||||||||||||||||| ||||||| |||||||||| | |||| |||   | |||||||||||||| || |||||||  ||||||||||||    
T  34645025 aaaatagtggaatcataagacgatatcgaaggataatacggtacttcactagtgacatatgctgatcttacccatcaattaggatagctagaa 34645117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 35387011 - 35386866
Alignment:
Q  13 aatatcctatcacaccttacaataaacagaacacacatcatcaatataaaaatagtggaatcataaggcgatatctaaggataatatgatactccaccga 112  Q
    ||||||| | |||||||||| | |||||| |||  | ||||||||| |||||||||| ||| ||||| ||||||||||| ||| |||| |||| ||   |    
T  35387011 aatatccaagcacaccttacgacaaacaggacatgcctcatcaata-aaaaatagtgaaattataagtcgatatctaagaatagtatggtacttcagtaa 35386913  T
Q  113 taacatatgctgatctaactcatcaatatggatagctagaagaaaat 159  Q
    ||||||||| | |  |||   ||||||| |||||||| |||||||||    
T  35386912 taacatatgttaacttaatctatcaatagggatagctcgaagaaaat 35386866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 28 - 284
Target Start/End: Original strand, 37517516 - 37517771
Alignment:
Q  28 cttacaataaacagaacacacatcatcaatataaaaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatc 127  Q
    ||||| ||||||||  ||||| |||||||||  ||| ||||||||||||||||||||||||||||||| ||||||||||||| | | ||||||| ||| |    
T  37517516 cttacgataaacagggcacacctcatcaataggaaa-tagtggaatcataaggcgatatctaaggatattatgatactccactggtgacatatgttgacc 37517614  T
Q  128 taactcatcaatatggatagctagaagaaaatcctaatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaact 227  Q
    |||| |||||||  |||||  |||||||||||| | | |||||| || ||||||||| |  ||| || | || | ||| || ||||| ||||||||||||    
T  37517615 taacccatcaatcgggatacttagaagaaaatcatgagcatgtgctgcttgcaaacatccaaaaattatcttctatctcgtggtcatgtcaaacttaact 37517714  T
Q  228 ttcatattttaaatatttttactaaaaagaacattcgtcaaaacatgttgtacttta 284  Q
    |||||||  | || | |||| |||||||||||| ||| |||||||||| || |||||    
T  37517715 ttcatatcatgaaaactttttctaaaaagaacactcgccaaaacatgtcgtgcttta 37517771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 44 - 284
Target Start/End: Complemental strand, 25021468 - 25021227
Alignment:
Q  44 cacacatcatcaatataaaaatagtggaatcataaggcgatatctaaggataa--tatgatactccaccgataacatatgctgatctaactcatcaatat 141  Q
    ||||| |||||||||| ||| |||||||||||| ||||||||||||||||||   ||  ||||| ||| | | |||| ||||||  |||| |||||||||    
T  25021468 cacacctcatcaatatgaaa-tagtggaatcatgaggcgatatctaaggatatagtactatacttcactggtgacatgtgctgacttaacccatcaatat 25021370  T
Q  142 ggatagctagaagaaaatcctaatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaactttcatattttaaat 241  Q
    ||||| ||||||||||||| | | |||||| || ||||||||||| |||||  |  ||||||||||| ||||||||||||||||||| ||||| || ||     
T  25021369 ggataactagaagaaaatcttgagcatgtgctgcttgcaaacaccctaaatccgccttatgtctagtggtcatatcaaacttaacttccatatcttgaac 25021270  T
Q  242 atttttactaaaaagaacattcgtcaaaacatgttgtacttta 284  Q
    |  |||| |||||||  || ||| ||||||||||||| |||||    
T  25021269 acctttaataaaaagggcactcgccaaaacatgttgtgcttta 25021227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 62 - 276
Target Start/End: Original strand, 24125488 - 24125701
Alignment:
Q  62 aaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatcc 161  Q
    ||||||||||||||||| ||||||| |||||||| || | |||||||| | | |||||| |||| ||||| |||||||  ||||||||||||||||||||    
T  24125488 aaatagtggaatcataatgcgatatttaaggatagtacggtactccactg-tgacatatcctgacctaacccatcaatcgggatagctagaagaaaatcc 24125586  T
Q  162 taatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaactttcatattttaaatatttttactaaaaagaacat 261  Q
    | | |||||| || |||||||||   |||  |||  |  | ||| || ||||| ||||||||||||| ||||| || || | |||||||||||||| ||     
T  24125587 tgagcatgtgatgcttgcaaacattctaatattgcctcctatctcgttgtcatgtcaaacttaacttccatatcttgaacacttttactaaaaagagcac 24125686  T
Q  262 tcgtcaaaacatgtt 276  Q
    ||  |||||||||||    
T  24125687 tcaccaaaacatgtt 24125701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 62 - 191
Target Start/End: Complemental strand, 42921777 - 42921648
Alignment:
Q  62 aaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatcc 161  Q
    ||||| |||||||||||| ||||||| ||  ||| |||||||||||||  || | ||||||||| ||||| || || |   |||||||||||||||||||    
T  42921777 aaataatggaatcataagacgatatcgaataatagtatgatactccacttatgatatatgctgacctaacccaccattcgagatagctagaagaaaatcc 42921678  T
Q  162 taatcatgtgttgtttgcaaacaccttaaa 191  Q
    ||| ||||||||| ||||||||||||||||    
T  42921677 taagcatgtgttgcttgcaaacaccttaaa 42921648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 284
Target Start/End: Original strand, 500653 - 500909
Alignment:
Q  27 ccttacaataaacagaacacacatcatcaatataaaaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgat 126  Q
    |||||||| ||||||  ||||| |||||||||  ||| || ||||||| |||||| ||||||||||||| || | |||||||  | | |||||||||||     
T  500653 ccttacaacaaacaggtcacacctcatcaataggaaa-tattggaatcgtaaggcaatatctaaggatagtacggtactccattggtgacatatgctgac 500751  T
Q  127 ctaactcatcaatatggatagctagaagaaaatcctaatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaac 226  Q
    |||||||||||||  |||| |||||||||||||| | | ||| || || ||||||| | | |||| |||| || | | | ||  | || | |||||||||    
T  500752 ctaactcatcaatcaggattgctagaagaaaatcatgagcatatgctgcttgcaaatatcctaaaattgtcttctttttcgtgtttatgttaaacttaac 500851  T
Q  227 tttcatattttaaatatttttactaaaaagaacattcgtcaaaacatgttgtacttta 284  Q
    || ||||| || || | |||||||||||| | || ||| ||||||||||||| |||||    
T  500852 ttccatatcttgaacacttttactaaaaaaagcactcgccaaaacatgttgtgcttta 500909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 61 - 173
Target Start/End: Complemental strand, 4007091 - 4006976
Alignment:
Q  61 aaaatagtggaatcataaggcgatatctaaggataata---tgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaa 157  Q
    ||||||||||||||||||| ||||||||||||||||||    | | ||||||  || |||||||||||  |||| |||||||  ||||||||||||||||    
T  4007091 aaaatagtggaatcataagacgatatctaaggataatacggcggtcctccactaatgacatatgctgacttaacccatcaatcaggatagctagaagaaa 4006992  T
Q  158 atcctaatcatgtgtt 173  Q
    ||| | | ||||||||    
T  4006991 atcatgagcatgtgtt 4006976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 39435093 - 39435225
Alignment:
Q  27 ccttacaataaacagaacacacatcatcaatataaaaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgat 126  Q
    |||||| | ||||||  ||||| |||||||||  |||| |||||||||||||| ||||||| ||||||| || | ||||| ||   | |||||||||||     
T  39435093 ccttacgacaaacagggcacacctcatcaataggaaaa-agtggaatcataagacgatatcgaaggatagtacggtactcaactagtgacatatgctgac 39435191  T
Q  127 ctaactcatcaatatggatagctagaagaaaatc 160  Q
    ||||| |||||||  |||||||||||||||||||    
T  39435192 ctaacccatcaattgggatagctagaagaaaatc 39435225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 10556177 - 10556104
Alignment:
Q  60 aaaaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactc 133  Q
    |||||||||||||||||||| |||||| |||||||||||||||| | ||||| | ||||||  ||| |||||||    
T  10556177 aaaaatagtggaatcataagacgatatttaaggataatatgataattcaccggtgacatatattgacctaactc 10556104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 191
Target Start/End: Original strand, 10190011 - 10190132
Alignment:
Q  70 gaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatcctaatcatg 169  Q
    |||||||||| | ||||||   |||| || |||||||||| ||| | ||||||| | |||||||||||| | |||||| |||||||||||| | | ||||    
T  10190011 gaatcataagacaatatctgcagatattacgatactccactgatgatatatgcttacctaactcatcaacaaggatagttagaagaaaatcatgaacatg 10190110  T
Q  170 tgttgtttgcaaacaccttaaa 191  Q
    ||||  |||||| |||| ||||    
T  10190111 tgttacttgcaagcaccctaaa 10190132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 62 - 284
Target Start/End: Complemental strand, 9685062 - 9684840
Alignment:
Q  62 aaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatcc 161  Q
    ||||||||||||| |||||||||||||||||||| || |||||||||| | | ||||||||||| ||||| |||||||| |||||||||||||||||||     
T  9685062 aaatagtggaatcgtaaggcgatatctaaggatagtacgatactccactggtgacatatgctgacctaacccatcaatagggatagctagaagaaaatct 9684963  T
Q  162 taatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaactttcatattttaaatatttttactaaaaagaacat 261  Q
    | |  ||||| || ||||||||| |  ||| |||  || ||||| || ||||| ||||||||||||| |||||  | || | ||||| |||||||| ||     
T  9684962 tgagtatgtgctgcttgcaaacatccaaaaattgccttctgtctcgtggtcatgtcaaacttaacttccatatcctgaacacttttattaaaaagagcac 9684863  T
Q  262 tcgtcaaaacatgttgtacttta 284  Q
    ||  ||||||||||||| |||||    
T  9684862 tcaccaaaacatgttgtgcttta 9684840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 62 - 174
Target Start/End: Complemental strand, 4412713 - 4412601
Alignment:
Q  62 aaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatcc 161  Q
    |||||||||||||||||| ||||||||||||||| || |||||||||| | | ||||||||||| |||||||||||||  ||||||||||||||||||||    
T  4412713 aaatagtggaatcataagacgatatctaaggatagtacgatactccactggtgacatatgctgacctaactcatcaatcgggatagctagaagaaaatcc 4412614  T
Q  162 taatcatgtgttg 174  Q
    | | |||||||||    
T  4412613 tgagcatgtgttg 4412601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 62 - 257
Target Start/End: Complemental strand, 19161473 - 19161278
Alignment:
Q  62 aaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatcc 161  Q
    |||||||| ||||||||| |||||||||| |||| || |||||||||| ||| ||||||||||| |||||  ||||||  ||||||||||||||||||||    
T  19161473 aaatagtgcaatcataagacgatatctaatgatagtacgatactccactgatgacatatgctgacctaacctatcaatcaggatagctagaagaaaatcc 19161374  T
Q  162 taatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaactttcatattttaaatatttttactaaaaaga 257  Q
    | | ||| | ||| ||||||||| | |||| |||| || ||||| ||  |||| ||||||||||||| ||||| || || |||||||  |||||||    
T  19161373 tgagcatatattgcttgcaaacatcctaaagttgtcttctgtctcgtgatcatgtcaaacttaacttccatatcttgaacatttttatgaaaaaga 19161278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 62 - 284
Target Start/End: Original strand, 17345098 - 17345320
Alignment:
Q  62 aaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatcc 161  Q
    |||||||||| ||||||||||||||||||||||| || ||||||||||   | |||||||| || ||||| |||||||  |||||||||||||||||||     
T  17345098 aaatagtggattcataaggcgatatctaaggatagtacgatactccactagtgacatatgccgacctaacccatcaattgggatagctagaagaaaatct 17345197  T
Q  162 taatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaactttcatattttaaatatttttactaaaaagaacat 261  Q
    | | |||||| |  ||||||||| |  ||| |||| || ||||| || ||||| ||||||||||||| |||||  | || | |||||||||||||| ||     
T  17345198 tgagcatgtggttcttgcaaacatccaaaaattgtcttttgtctggtggtcatgtcaaacttaacttccatatgctgaacacttttactaaaaagagcac 17345297  T
Q  262 tcgtcaaaacatgttgtacttta 284  Q
    ||  ||||||| ||||| |||||    
T  17345298 tcaccaaaacaagttgtgcttta 17345320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 36 - 184
Target Start/End: Complemental strand, 41867580 - 41867433
Alignment:
Q  36 aaacagaacacacatcatcaatataaaaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcat 135  Q
    ||||||| ||||| |||||||||  ||| ||||||||||||||| ||||||||||||||| || |||||||||| | | ||||||||||| ||||| |||    
T  41867580 aaacagagcacacctcatcaataggaaa-tagtggaatcataagacgatatctaaggatagtacgatactccactggtgacatatgctgacctaacccat 41867482  T
Q  136 caatatggatagctagaagaaaatcctaatcatgtgttgtttgcaaaca 184  Q
    ||||  |||||||||||||||||| || | |||||| || |||||||||    
T  41867481 caatcgggatagctagaagaaaattctgagcatgtgctgcttgcaaaca 41867433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 77 - 292
Target Start/End: Complemental strand, 18744650 - 18744435
Alignment:
Q  77 aaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatcctaatcatgtgttgtt 176  Q
    ||||||||||||||||||| || |||||||||| | | ||||||||| | ||||| |||||||  |||||||||||||||| || | | ||| || || |    
T  18744650 aaggcgatatctaaggatagtacgatactccactggtgacatatgctaacctaacccatcaatcgggatagctagaagaaattcttgagcatttggtgct 18744551  T
Q  177 tgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaactttcatattttaaatatttttactaaaaagaacattcgtcaaaacatgtt 276  Q
    |||||||| |  ||| |||  || ||||| || ||||| ||||||||||||| |||||  | || | |||||||||||||| || ||| |||||||||||    
T  18744550 tgcaaacatccaaaaattgccttctgtctcgtggtcatctcaaacttaacttccatatcctgaacacttttactaaaaagagcactcgccaaaacatgtt 18744451  T
Q  277 gtactttacgagagac 292  Q
    || ||||| |||||||    
T  18744450 gtgctttaggagagac 18744435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 62 - 184
Target Start/End: Complemental strand, 20142387 - 20142265
Alignment:
Q  62 aaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatcc 161  Q
    |||||||||||||||||||||||||||||||||| ||  ||||||||| | | |||||||||||  |||| |||||||  ||||||||||||||||||||    
T  20142387 aaatagtggaatcataaggcgatatctaaggatagtacaatactccactgttgacatatgctgacttaacccatcaatcgggatagctagaagaaaatcc 20142288  T
Q  162 taatcatgtgttgtttgcaaaca 184  Q
    | | |||||| || |||||||||    
T  20142287 tgagcatgtgctgcttgcaaaca 20142265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 61 - 284
Target Start/End: Original strand, 28225459 - 28225681
Alignment:
Q  61 aaaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatc 160  Q
    |||||| ||||||||||||  |||||| | ||||| || | |||||| | | | ||||||||||||||||| ||||||| ||||||||||||||||||||    
T  28225459 aaaataatggaatcataagatgatatcgacggatagtacggtactccgctggtgacatatgctgatctaacccatcaat-tggatagctagaagaaaatc 28225557  T
Q  161 ctaatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaactttcatattttaaatatttttactaaaaagaaca 260  Q
     | | |||||| |  ||||||||| |  |||   |  || |||||||| ||||| |||||| |||||| ||||| || || | |||||||||||||| ||    
T  28225558 ttgagcatgtgcttcttgcaaacatccaaaacccgccttctgtctagtggtcatgtcaaacataacttccatatcttgaacaattttactaaaaagagca 28225657  T
Q  261 ttcgtcaaaacatgttgtacttta 284  Q
     ||| ||||| ||||||| |||||    
T  28225658 ctcgccaaaatatgttgtgcttta 28225681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 44686839 - 44686999
Alignment:
Q  23 cacaccttacaataaacagaacacacatcatcaatataaaaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgc 122  Q
    |||| ||||| | |||||| |||||| |||||||||  | | ||||||||||||||| ||||||| ||||||| || |||||||||  | | |||||| |    
T  44686839 cacatcttacgacaaacaggacacacctcatcaataggaca-tagtggaatcataagacgatatcgaaggatagtacgatactccattggtgacatatac 44686937  T
Q  123 tgatctaactcatcaatatggatagctagaagaaaatcctaatcatgtgttgtttgcaaaca 184  Q
    ||| ||||| |||||||   |||||||||||||||||| ||| |||||| || |||||||||    
T  44686938 tgacctaacccatcaattgagatagctagaagaaaatcttaagcatgtgctgcttgcaaaca 44686999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 284
Target Start/End: Original strand, 40856896 - 40857053
Alignment:
Q  127 ctaactcatcaatatgg-atagctagaagaaaatcctaatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaa 225  Q
    |||||||||||||| || ||||||||||||||||| | | ||||| | | ||||||||||   |||    |||| ||||| || ||||| | |||||| |    
T  40856896 ctaactcatcaataggggatagctagaagaaaatcatgagcatgtct-gcttgcaaacacgcaaaaacgattttctgtctggtggtcatgttaaacttta 40856994  T
Q  226 ctttcatattttaaatatttttactaaaaagaacattcgtcaaaacatgttgtacttta 284  Q
    |||||||||  |||| | ||||||||||||| ||||  ||||||||| |||| ||||||    
T  40856995 ctttcatatcctaaacacttttactaaaaaggacatgtgtcaaaacaagttggacttta 40857053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 283
Target Start/End: Original strand, 8588681 - 8588766
Alignment:
Q  198 ttatgtctagtagtcatatcaaacttaactttcatattttaaatatttttactaaaaagaacattcgtcaaaacatgttgtacttt 283  Q
    |||||| |||| ||||| |||||||| |||| ||||| || || | ||||| ||||||| ||| ||| ||||||||||||| ||||    
T  8588681 ttatgtttagtggtcatgtcaaacttgacttccatatcttgaacacttttattaaaaaggacactcgccaaaacatgttgtgcttt 8588766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 64 - 293
Target Start/End: Original strand, 49018414 - 49018643
Alignment:
Q  64 atagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatccta 163  Q
    ||||||||||||||||||||||||||| |||| |  ||||||||||   | ||||  ||||| ||||| |||||||  ||||||||||||||||||| |     
T  49018414 atagtggaatcataaggcgatatctaatgatagttcgatactccacttgtgacatgcgctgacctaacccatcaatcaggatagctagaagaaaatcatg 49018513  T
Q  164 atcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaactttcatattttaaatatttttactaaaaagaacattc 263  Q
    | |||||  || ||||||||| | |||| |||| || ||||| || ||||  ||||||||||||| ||||| || || | ||||| |||||||| || ||    
T  49018514 agcatgtactgcttgcaaacatcctaaaattgtcttttgtctcgtggtcacgtcaaacttaacttacatatcttgaaaacttttattaaaaagagcactc 49018613  T
Q  264 gtcaaaacatgttgtactttacgagagaca 293  Q
    | ||||||||||||| ||||| ||||||||    
T  49018614 gccaaaacatgttgtgctttaggagagaca 49018643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 62 - 223
Target Start/End: Original strand, 53786168 - 53786329
Alignment:
Q  62 aaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatcc 161  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||| | | ||||||||||| ||||| |||||||  | |||||||||||||||||     
T  53786168 aaatagttgaatcataaggcgatatctaaggataatacgatactccactggtgacatatgctgacctaacccatcaatcagaatagctagaagaaaatct 53786267  T
Q  162 taatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaactt 223  Q
    | | |||||| || ||||||||| |  ||| |||  |||||||| || ||||| ||||||||    
T  53786268 tgagcatgtggtgcttgcaaacatccaaaaattgccttatgtctcgtggtcatgtcaaactt 53786329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 62 - 284
Target Start/End: Original strand, 29862257 - 29862483
Alignment:
Q  62 aaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctga-tctaactcatcaatatggatagctagaagaaaatc 160  Q
    ||||| |||||||||||||||||||||||||||| || | |||| ||| | | ||||||||||| | |||| |||||||   ||||||||||||||||||    
T  29862257 aaataatggaatcataaggcgatatctaaggatagtacgctacttcactggtgacatatgctgactttaacccatcaatcgagatagctagaagaaaatc 29862356  T
Q  161 ctaatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaactttcatattttaaatatttttactaaaaagaa-- 258  Q
     | | ||||||||||||||||||| | ||||  ||  ||||||| |||  |||| ||||||||||||| ||||| || || | |||||||||||| ||      
T  29862357 atgagcatgtgttgtttgcaaacatcctaaaactgcattatgtcgagtgatcatgtcaaacttaacttccatatcttgaacacttttactaaaaaaaaca 29862456  T
Q  259 -cattcgtcaaaacatgttgtacttta 284  Q
     |||| | ||||||||||||| |||||    
T  29862457 gcattggccaaaacatgttgtgcttta 29862483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 68 - 275
Target Start/End: Complemental strand, 52411543 - 52411336
Alignment:
Q  68 tggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatcctaatca 167  Q
    |||||||| |||||||||||||||||||  | ||||||||||   | |||||||||||  ||||||||||||  ||||||||||||||||||| | | ||    
T  52411543 tggaatcacaaggcgatatctaaggatagcacgatactccactcgtgacatatgctgacttaactcatcaatcgggatagctagaagaaaatcatgagca 52411444  T
Q  168 tgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaactttcatattttaaatatttttactaaaaagaacattcgtca 267  Q
    || | ||  |||||||||| |||| |||| || |||||| |  ||||  |||||||||||| ||||| || || | |||||||||||||| || |||  |    
T  52411443 tgcgctgcatgcaaacaccctaaaattgtcttttgtctaatgttcatgccaaacttaacttccatatctttaacacttttactaaaaagagcactcgcta 52411344  T
Q  268 aaacatgt 275  Q
    ||||||||    
T  52411343 aaacatgt 52411336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 7501805 - 7501724
Alignment:
Q  42 aacacacatcatcaatataaaaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctg 124  Q
    ||||||| |||||||||| ||| ||| ||||| ||||||||||||||||||||| || | |||||||| ||| ||||||||||    
T  7501805 aacacacctcatcaatatgaaa-tagaggaattataaggcgatatctaaggatagtacggtactccactgatgacatatgctg 7501724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 160
Target Start/End: Original strand, 35236598 - 35236686
Alignment:
Q  72 atcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatc 160  Q
    ||||||| |||||||||||||||| |||| |||||||| | | ||||||||||| ||||  ||||||   ||| |||| ||||||||||    
T  35236598 atcataaagcgatatctaaggatagtatggtactccactggtgacatatgctgacctaatccatcaaccaggacagcttgaagaaaatc 35236686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 52741174 - 52741127
Alignment:
Q  62 aaatagtggaatcataaggcgatatctaaggataatatgatactccac 109  Q
    ||||||||||||||||||  | |||||||||||| |||||||||||||    
T  52741174 aaatagtggaatcataagatggtatctaaggatagtatgatactccac 52741127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 37992751 - 37992811
Alignment:
Q  36 aaacagaacacacatcatcaatataaaaatagtggaatcataaggcgatatctaaggataat 97  Q
    ||||||| ||||| |||||||| || | ||| || |||||||||||||||||||||||||||    
T  37992751 aaacagagcacacctcatcaat-tagatatattgaaatcataaggcgatatctaaggataat 37992811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 62 - 292
Target Start/End: Original strand, 20181 - 20415
Alignment:
Q  62 aaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatcc 161  Q
    ||||| || |||||||||| ||||||||||||||  |  ||||||||  | | ||||||| ||| ||||| |||||||  ||||||||| ||||||||||    
T  20181 aaataatgtaatcataaggtgatatctaaggatagcaccatactccaatgttgacatatgttgacctaacccatcaattgggatagctacaagaaaatcc 20280  T
Q  162 t----aatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaactttcatattttaaatatttttactaaaaaga 257  Q
    |    |  |||||||||  |||||||||  ||||  ||| || |||||||| ||||| ||||||||||||||||||| || || | ||||| |||||||     
T  20281 tgagcatgcatgtgttgcatgcaaacactctaaaactgtcttctgtctagtggtcatgtcaaacttaactttcatatcttgaacacttttattaaaaagg 20380  T
Q  258 acattcgtcaaaacatgttgtactttacgagagac 292  Q
     |||||| ||||||||||||| ||||| |||||||    
T  20381 gcattcgccaaaacatgttgtgctttaggagagac 20415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 284
Target Start/End: Original strand, 5827680 - 5827936
Alignment:
Q  27 ccttacaataaacagaacacacatcatcaatataaaaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgat 126  Q
    |||||| | ||||||  ||||| ||||||||| | |||||||||||||||||| ||||||| ||||||| || | |||||||| | | |||||||||||     
T  5827680 ccttacgacaaacagggcacacctcatcaata-agaaatagtggaatcataagacgatatcgaaggatagtacggtactccactggtgacatatgctgac 5827778  T
Q  127 ctaactcatcaatatggatagctagaagaaaatcctaatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaac 226  Q
    ||||| |||||||  ||||||||||||||||||  | | |||||| || ||||||||| | ||||  ||  || |||||||| | ||| |||||||||||    
T  5827779 ctaacccatcaattgggatagctagaagaaaattttgagcatgtgctgcttgcaaacatcctaaaactgccttctgtctagtggccatgtcaaacttaac 5827878  T
Q  227 tttcatattttaaatatttttactaaaaagaacattcgtcaaaacatgttgtacttta 284  Q
    ||  |||| || |  | ||||| ||| |||| || ||| ||||||||||||| |||||    
T  5827879 ttctatatcttgaccaattttattaagaagagcactcgccaaaacatgttgtgcttta 5827936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 62 - 257
Target Start/End: Original strand, 47679584 - 47679776
Alignment:
Q  62 aaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatcc 161  Q
    ||||||||||||||| |||| ||||||| ||||| || | |||||||| ||   |||||| |||  ||||||||||||  ||||||||||||||||||||    
T  47679584 aaatagtggaatcatgaggcaatatctatggatagtacgttactccactga---catatgttgacataactcatcaatcaggatagctagaagaaaatcc 47679680  T
Q  162 taatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaactttcatattttaaatatttttactaaaaaga 257  Q
    | | |||||| |  ||||||||| | ||||  ||| || |||||||| ||||| ||||||||||||| ||||| || || | ||||||||||||||    
T  47679681 tgagcatgtgctacttgcaaacatcctaaaactgtcttctgtctagtggtcatgtcaaacttaacttccatatcttgaacaattttactaaaaaga 47679776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 62 - 257
Target Start/End: Original strand, 32585607 - 32585802
Alignment:
Q  62 aaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatcc 161  Q
    |||||||||||||||||| ||| ||||||||||| || | |||| ||  | | |||||||||||  |||  |||||||  ||||||| |||||||||||     
T  32585607 aaatagtggaatcataagacgaaatctaaggatagtacggtacttcattggtgacatatgctgacataatccatcaatcaggatagccagaagaaaatca 32585706  T
Q  162 taatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaactttcatattttaaatatttttactaaaaaga 257  Q
    | |  || ||||| ||||||||| | ||||  ||| || |||||||| ||||| ||||||||||||||||||| ||||| | ||||||||||||||    
T  32585707 tgagaatatgttgattgcaaacatcctaaaggtgtcttctgtctagtggtcatgtcaaacttaactttcatatattaaacaattttactaaaaaga 32585802  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 62 - 162
Target Start/End: Original strand, 24528050 - 24528150
Alignment:
Q  62 aaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatcc 161  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||| | | ||||||| ||  ||||| |||||||   |||||||||||||||||||    
T  24528050 aaatagtggaatcataaggcgatatctaatgatagtatgatactccactggtgacatatgttgtcctaacccatcaatcatgatagctagaagaaaatcc 24528149  T
Q  162 t 162  Q
    |    
T  24528150 t 24528150  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 150
Target Start/End: Original strand, 4501700 - 4501806
Alignment:
Q  43 acacacatcatcaatataaaaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatg 142  Q
    |||||| ||||||||| |||| || |||||||||||| ||||||||||||||| || |||||||||  | | ||||||||||| |||||  ||||||  |    
T  4501700 acacacctcatcaatagaaaa-taatggaatcataagacgatatctaaggatagtacgatactccattggtgacatatgctgacctaacatatcaatcgg 4501798  T
Q  143 gatagcta 150  Q
    ||||||||    
T  4501799 gatagcta 4501806  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 45613522 - 45613465
Alignment:
Q  28 cttacaataaacagaacacacatcatcaatataaaaatagtggaatcataaggcgatat 86  Q
    |||||||||||||| |||||| |||||||||   |||||||||||||||||| ||||||    
T  45613522 cttacaataaacaggacacacctcatcaata-ggaaatagtggaatcataagacgatat 45613465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 10905563 - 10905607
Alignment:
Q  62 aaatagtggaatcataaggcgatatctaaggataatatgatactc 106  Q
    ||||||||||||||||||  |||||||||||||| || |||||||    
T  10905563 aaatagtggaatcataagatgatatctaaggatagtacgatactc 10905607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 61 - 186
Target Start/End: Complemental strand, 29337734 - 29337609
Alignment:
Q  61 aaaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatc 160  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||     | ||||||||| ||||| |||||||  |||||||||||||||||||    
T  29337734 aaaatagaggaatcataaggcgatatctaaggataatatgatacttcacttgcgaaatatgctgacctaacccatcaatcaggatagctagaagaaaatc 29337635  T
Q  161 ctaatcatgtgttgtttgcaaacacc 186  Q
    || | |||||| || |||||||||||    
T  29337634 ctgagcatgtgctgcttgcaaacacc 29337609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 45354 - 45239
Alignment:
Q  23 cacaccttacaataaacagaacacacatcatcaatataaaaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgc 122  Q
    |||||||||| | ||||||  ||||| |||||||||  ||| || ||||||||||||| |||||||||||||| ||||||||||||| ||| ||||||||    
T  45354 cacaccttacgacaaacagggcacacctcatcaataggaaa-tattggaatcataaggtgatatctaaggatagtatgatactccacagatgacatatgc 45256  T
Q  123 tgatctaactcatcaat 139  Q
    ||| ||||| |||||||    
T  45255 tgacctaacccatcaat 45239  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 61 - 186
Target Start/End: Complemental strand, 23910938 - 23910813
Alignment:
Q  61 aaaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatc 160  Q
    ||||| |||||||||||||||||||| ||| || | ||  ||| ||||| | | ||||||||| | |||||||||||||  |||||| ||||| |||||     
T  23910938 aaaattgtggaatcataaggcgatatttaaagagagtacaatattccactggtgacatatgctaacctaactcatcaattgggatagttagaaaaaaatt 23910839  T
Q  161 ctaatcatgtgttgtttgcaaacacc 186  Q
    |||| ||||||||| |||||||||||    
T  23910838 ctaaacatgtgttgcttgcaaacacc 23910813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 68 - 186
Target Start/End: Complemental strand, 8374939 - 8374821
Alignment:
Q  68 tggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatcctaatca 167  Q
    ||||||||||| ||||||| | |||||| || ||||||| |  | | ||||||| ||   |||| |||||||| ||||||||||||||||||  | | ||    
T  8374939 tggaatcataatgcgatatatgaggatagtacgatactctattggtgacatatgttggcttaacccatcaataaggatagctagaagaaaatattgagca 8374840  T
Q  168 tgtgttgtttgcaaacacc 186  Q
    |||||||||||||||||||    
T  8374839 tgtgttgtttgcaaacacc 8374821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 62 - 284
Target Start/End: Original strand, 32120389 - 32120610
Alignment:
Q  62 aaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatcc 161  Q
    ||||| ||||||||||||||||||| ||| |||  ||||  ||||||  | |||||| |||||| ||||| |||||||   |||| | |||||||||||     
T  32120389 aaatattggaatcataaggcgatatataaagattgtatggcactccattggtaacatttgctgaactaac-catcaatcgagataacaagaagaaaatca 32120487  T
Q  162 taatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaactttcatattttaaatatttttactaaaaagaacat 261  Q
    | | |||||  |  ||||||||| | || | |||| || ||||| || ||||| ||||||||||||| ||||| || || | |||  ||||||||| ||     
T  32120488 tgagcatgtcctacttgcaaacatcctataattgtcttctgtcttgtggtcatgtcaaacttaacttccatatcttgaacactttacctaaaaagagcac 32120587  T
Q  262 tcgtcaaaacatgttgtacttta 284  Q
    ||| ||||||||||||| |||||    
T  32120588 tcgccaaaacatgttgtgcttta 32120610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 62 - 284
Target Start/End: Original strand, 34304957 - 34305179
Alignment:
Q  62 aaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaagaaaatcc 161  Q
    ||||| |||||||||||| |  |||| ||||||| || | |||||||| | | |||||||||||  |||| |||||||  ||||| |||||| ||||||     
T  34304957 aaataatggaatcataagacagtatcgaaggatagtacggtactccactggtgacatatgctgacataacccatcaattgggatacctagaataaaatct 34305056  T
Q  162 taatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaactttcatattttaaatatttttactaaaaagaacat 261  Q
    | | |||||| || || |||||| |  |||  |   || ||||| |  ||||| ||||||||||||| ||||| || || | |||||||||||||| ||     
T  34305057 tgagcatgtgctgcttccaaacatccaaaaacttccttctgtcttgcggtcatgtcaaacttaacttccatatcttgaacaattttactaaaaagagcac 34305156  T
Q  262 tcgtcaaaacatgttgtacttta 284  Q
    ||| ||||||||||||| |||||    
T  34305157 tcgccaaaacatgttgtgcttta 34305179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 4206243 - 4206166
Alignment:
Q  62 aaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaat 139  Q
    ||||||||||||| |||||||| ||||||||||| || | |||||||| | | ||||||||||| ||||| |||||||    
T  4206243 aaatagtggaatcgtaaggcgagatctaaggatagtacggtactccactggtgacatatgctgacctaacccatcaat 4206166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 32116249 - 32116317
Alignment:
Q  216 tcaaacttaactttcatattttaaatatttttactaaaaagaacattcgtcaaaacatgttgtacttta 284  Q
    ||||||||||||| ||||| || || | |||||||||||||| || ||||||||||||||||| |||||    
T  32116249 tcaaacttaacttccatatcttgaacacttttactaaaaagatcactcgtcaaaacatgttgtgcttta 32116317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 45189 - 45115
Alignment:
Q  210 gtcatatcaaacttaactttcatattttaaatatttttactaaaaagaacattcgtcaaaacatgttgtacttta 284  Q
    ||||| ||||||||||||| |||||| | || | |||||||||||||| || ||| ||||||||||||| |||||    
T  45189 gtcatgtcaaacttaacttccatattctgaacacttttactaaaaagagcactcgccaaaacatgttgtgcttta 45115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 153
Target Start/End: Original strand, 22986385 - 22986470
Alignment:
Q  68 tggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaa 153  Q
    ||||||||| ||||||||||| |||||  |||||||||| |  ||| | |||||||||| ||||||||| ||| |||| |||||||    
T  22986385 tggaatcatgaggcgatatctgaggattgtatgatactctagggatgaaatatgctgatataactcatccatagggatggctagaa 22986470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 153
Target Start/End: Complemental strand, 23802009 - 23801924
Alignment:
Q  68 tggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagctagaa 153  Q
    ||||||||| ||||||||||| |||||  |||||||||| |  ||| | |||||||||| ||||||||| ||| |||| |||||||    
T  23802009 tggaatcatgaggcgatatctgaggattgtatgatactctagggatgaaatatgctgatataactcatccatagggatggctagaa 23801924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 284
Target Start/End: Original strand, 10402328 - 10402410
Alignment:
Q  201 tgtctagtagtcatatcaaacttaactttcatattttaaatatttttactaaaaagaacattcgtcaaaacatgttgtacttta 284  Q
    |||||||| ||||| ||||||||||||| ||||| || ||    ||||||||||||| || ||||||||||||||||| |||||    
T  10402328 tgtctagtggtcatgtcaaacttaacttccatatcttgaa-cgatttactaaaaagagcactcgtcaaaacatgttgtgcttta 10402410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 284
Target Start/End: Complemental strand, 7200231 - 7199999
Alignment:
Q  50 tcatcaatataaaaatagtggaatcataaggcgatatctaaggataatatgatactccaccgataacatatgctgatctaactcatcaatatggatagct 149  Q
    ||||||||| |||| || ||||||||| | |||||||| ||| ||| | || ||||| ||   | ||||||| ||||||||| |||||||   |||||||    
T  7200231 tcatcaata-aaaagtaatggaatcattaagcgatatcgaagaatagtgtggtactctacgtgtgacatatgttgatctaacccatcaattgagatagct 7200133  T
Q  150 agaagaaaatcctaatcatgtgttgtttgcaaacaccttaaatttgttttatgtctagtagtcatatcaaacttaactttcatattttaaatatttttac 249  Q
    ||||||||||||| | |||||  |  |||| ||||||  | |  |  ||| ||||| || |||||||||||||| |||| ||||| || |  | ||||||    
T  7200132 agaagaaaatcctgagcatgttcttcttgccaacacccaagaactactttctgtcttgtggtcatatcaaacttcacttccatatcttgatcaattttac 7200033  T
Q  250 taaaaagaacattcgtcaaaacatgttgtacttta 284  Q
    |||||| | |||||  ||||||||||||| |||||    
T  7200032 taaaaa-agcattcaccaaaacatgttgtgcttta 7199999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 32116111 - 32116194
Alignment:
Q  23 cacaccttacaataaacagaacacacatcatcaatataaaaatagtggaatcataaggcgatatctaaggataatatgatactcc 107  Q
    |||||||||| | ||||||  |||||||||||||||   ||||||| |||||||||| | ||||||| ||||| |||| ||||||    
T  32116111 cacaccttacgacaaacagggcacacatcatcaata-ggaaatagttgaatcataagacaatatctagggatagtatggtactcc 32116194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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