View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_high_28 (Length: 391)
Name: NF2014_high_28
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 48 - 190
Target Start/End: Complemental strand, 33117355 - 33117205
Alignment:
| Q |
48 |
gtgaataaagaatattgaaaacaaaaagacaaaacgattagatatttgagatgtgaaa--------gctctaatttaccaaatgttgagtagcataattt |
139 |
Q |
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| T |
33117355 |
gtgaataaagaatattgaaaacaaaaagacaaaacgattagatatttgagatgtgaaacagtgaaagctctaatttaccaaatgttgagtagcataattt |
33117256 |
T |
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| Q |
140 |
tatattcacaatgtggatattcattccacttattttttaagctggtaatcc |
190 |
Q |
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| T |
33117255 |
tatattcacaatgtggatattcattccacttattttttaagctggtaatcc |
33117205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 273 - 387
Target Start/End: Complemental strand, 33117137 - 33117023
Alignment:
| Q |
273 |
cataaactaactcaaactgactcaacccttctgagaggtgattctcttattccaaaacttgaattgcagagtcctttgttgaagcatcttctccacttcc |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33117137 |
cataaactaactcaaactgactcaacccttctgagaggcgattctcttattccaaaacttgaattgcagagtcctttgttgaagcatcttctccacttcc |
33117038 |
T |
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| Q |
373 |
tcaattggaacacct |
387 |
Q |
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| T |
33117037 |
tcaattggaacacct |
33117023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 261
Target Start/End: Complemental strand, 33117163 - 33117131
Alignment:
| Q |
229 |
attaatgcagatcctaagaaaatagtcataaac |
261 |
Q |
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| T |
33117163 |
attaatgcagatcctaagaaaatagtcataaac |
33117131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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