View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_high_43 (Length: 339)
Name: NF2014_high_43
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_high_43 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 100 - 328
Target Start/End: Complemental strand, 394051 - 393823
Alignment:
| Q |
100 |
gcactcactagcgaatgaactcaacgctcnnnnnnngcaccaaaaagaaaggatagttgataaactcgtttagaatgatttttatatttgattaattatc |
199 |
Q |
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| T |
394051 |
gcactcactagcgaatgaactcaacgctctgtttttgcgccaaaaagaaaggatggttgataaactcgtttagaatgatttttatatttgattaattatc |
393952 |
T |
|
| Q |
200 |
tgattgaatttgtaaactttaatctttaaactataaacaacttgatttagcttataaaaacactataagttcactaagataaaataagctataagctctt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
393951 |
tgattgaatttgtaaactttaatctttaaactataaacaacttgatttagcttataaaaacactataagttcactaagataagataagctataagctctt |
393852 |
T |
|
| Q |
300 |
gagtaaatgataattatcaaatgagtatt |
328 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
393851 |
gagtaaatgataattatcaaatgagtatt |
393823 |
T |
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