View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_high_44 (Length: 335)
Name: NF2014_high_44
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 9 - 318
Target Start/End: Complemental strand, 8528126 - 8527803
Alignment:
| Q |
9 |
gataatactcttcaaaaagtctccctttactgtcgtcccaaaggtctttcgaaatgaggattgatatttgtcgcaaaccatacttccacaaaggcataat |
108 |
Q |
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| T |
8528126 |
gataatactcttgaaaaagtctccccttactgtcgtcc-aaaggtctttcgaaatgaggattgatatttgtcgcaaaccatacttccacaaaggcatcat |
8528028 |
T |
|
| Q |
109 |
gaatgcgttttgtaacaacacaaggaactgcatttaaaaatcctaaggaaaattagctttgtgtacaatttacaat---------------tccagttta |
193 |
Q |
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| T |
8528027 |
gaatgcgttttgtaacaacacaaggaactgcatttaaaaatcctaaggaaaattagctttgtgtacaatttacaatttagtgaagaaaatgtccagtttg |
8527928 |
T |
|
| Q |
194 |
cttatgaaaatcatagtggtttgtgtacaactccatcgctatcttctttaatgttagatttgctaccgagcaaaaagagagaactactggtttgtataaa |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8527927 |
cttatgaaaatcatagtggtttgtgtacaactccatcgctatcttctttaatgttagatttgctaccgagcaaaaagagagaactactggtttgtataaa |
8527828 |
T |
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| Q |
294 |
ataccaccacaaatcacattgcaat |
318 |
Q |
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|||||||||||||||| |||||||| |
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| T |
8527827 |
ataccaccacaaatcaaattgcaat |
8527803 |
T |
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