View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2014_high_50 (Length: 315)

Name: NF2014_high_50
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2014_high_50
NF2014_high_50
[»] chr3 (4 HSPs)
chr3 (44-104)||(34228251-34228311)
chr3 (47-104)||(48252267-48252324)
chr3 (45-97)||(31472049-31472101)
chr3 (44-111)||(41287876-41287942)
[»] chr8 (6 HSPs)
chr8 (46-104)||(4989755-4989813)
chr8 (44-104)||(34085199-34085259)
chr8 (24-91)||(18200654-18200721)
chr8 (51-104)||(10451959-10452012)
chr8 (44-91)||(3347504-3347551)
chr8 (47-77)||(15869007-15869037)
[»] chr4 (17 HSPs)
chr4 (46-104)||(16831096-16831154)
chr4 (46-104)||(2908206-2908264)
chr4 (45-105)||(48524552-48524612)
chr4 (44-91)||(34458793-34458840)
chr4 (49-104)||(55090840-55090895)
chr4 (34-104)||(32325084-32325154)
chr4 (56-97)||(48400945-48400986)
chr4 (42-91)||(53145202-53145251)
chr4 (44-104)||(28299283-28299343)
chr4 (45-104)||(53142841-53142900)
chr4 (45-91)||(34236253-34236299)
chr4 (49-111)||(37992906-37992967)
chr4 (47-101)||(45921335-45921389)
chr4 (47-104)||(4860177-4860234)
chr4 (46-111)||(40298025-40298089)
chr4 (131-190)||(37992827-37992887)
chr4 (51-111)||(50101280-50101339)
[»] chr7 (6 HSPs)
chr7 (46-104)||(24937891-24937949)
chr7 (46-91)||(28664542-28664587)
chr7 (58-104)||(1112159-1112205)
chr7 (42-104)||(8656355-8656417)
chr7 (53-111)||(47537479-47537536)
chr7 (44-104)||(39786445-39786505)
[»] chr5 (9 HSPs)
chr5 (46-104)||(3600170-3600228)
chr5 (47-91)||(15139166-15139210)
chr5 (45-104)||(16802087-16802146)
chr5 (46-104)||(6102888-6102946)
chr5 (46-100)||(29552389-29552443)
chr5 (46-75)||(5471314-5471343)
chr5 (51-104)||(12036308-12036361)
chr5 (46-91)||(34346955-34347000)
chr5 (43-104)||(35290697-35290758)
[»] chr2 (7 HSPs)
chr2 (47-105)||(13835895-13835953)
chr2 (46-104)||(1870489-1870547)
chr2 (58-104)||(5444499-5444545)
chr2 (44-90)||(18857508-18857554)
chr2 (42-104)||(29525667-29525729)
chr2 (62-104)||(33635573-33635615)
chr2 (45-101)||(13618234-13618290)
[»] chr6 (3 HSPs)
chr6 (47-88)||(9213040-9213081)
chr6 (49-104)||(6770894-6770949)
chr6 (44-111)||(32800259-32800325)
[»] chr1 (7 HSPs)
chr1 (46-104)||(31160786-31160844)
chr1 (44-104)||(27558-27618)
chr1 (46-104)||(11065862-11065920)
chr1 (45-91)||(39993451-39993497)
chr1 (46-91)||(34382628-34382673)
chr1 (58-91)||(41936218-41936251)
chr1 (44-100)||(48375305-48375361)
[»] scaffold0299 (1 HSPs)
scaffold0299 (43-104)||(18008-18069)


Alignment Details
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 34228251 - 34228311
Alignment:
Q  44 gacaatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    ||||||||||||| |||||||||||||||||||||| || |||||||| ||||||||||||    
T  34228251 gacaatggttaaggaaactataaataaaaaatttgtcttaaaaatataaattttgactttt 34228311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 48252267 - 48252324
Alignment:
Q  47 aatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    |||||||||| || ||||||||||||||||| | |||||||||||  |||||||||||    
T  48252267 aatggttaaggaatctataaataaaaaatttatcttgaaaatataagttttgactttt 48252324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 31472049 - 31472101
Alignment:
Q  45 acaatggttaagaaaactataaataaaaaatttgtattgaaaatatatatttt 97  Q
    |||||| | |||||||||||||||||||||||| | ||||||||||| |||||    
T  31472049 acaatgatgaagaaaactataaataaaaaatttattttgaaaatataaatttt 31472101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 41287876 - 41287942
Alignment:
Q  44 gacaatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttttgattaa 111  Q
    ||||||| ||||| |||||||||||| ||||||||| || ||||||||  |||||| |||||||||||    
T  41287876 gacaatgattaaggaaactataaatagaaaatttgttttaaaaatataagttttga-tttttgattaa 41287942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 4989813 - 4989755
Alignment:
Q  46 caatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    |||||||||||||||||||||||||||||||||| |||||||||||  |||||| ||||    
T  4989813 caatggttaagaaaactataaataaaaaatttgtcttgaaaatataagttttgattttt 4989755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 34085199 - 34085259
Alignment:
Q  44 gacaatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    ||||||||||||||||   ||||||||||||||||| |||||||||||  |||||||||||    
T  34085199 gacaatggttaagaaattcataaataaaaaatttgttttgaaaatataagttttgactttt 34085259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 18200654 - 18200721
Alignment:
Q  24 ttgctaatcggtgtcttgaagacaatggttaagaaaactataaataaaaaatttgtattgaaaatata 91  Q
    ||||||||||||||| | |||| ||||||||||||| ||| ||||||||| ||||| || ||||||||    
T  18200654 ttgctaatcggtgtcctcaagataatggttaagaaatctacaaataaaaattttgtcttaaaaatata 18200721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 10452012 - 10451959
Alignment:
Q  51 gttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    |||||| |||||||||||||||| |||||||| ||||||||  |||||||||||    
T  10452012 gttaaggaaactataaataaaaattttgtattaaaaatataagttttgactttt 10451959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 3347504 - 3347551
Alignment:
Q  44 gacaatggttaagaaaactataaataaaaaatttgtattgaaaatata 91  Q
    |||||||||||||||| ||| ||||||||| ||||| |||||||||||    
T  3347504 gacaatggttaagaaatctacaaataaaaattttgtcttgaaaatata 3347551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 77
Target Start/End: Original strand, 15869007 - 15869037
Alignment:
Q  47 aatggttaagaaaactataaataaaaaattt 77  Q
    |||||||||||||||||||||||||||||||    
T  15869007 aatggttaagaaaactataaataaaaaattt 15869037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 16831096 - 16831154
Alignment:
Q  46 caatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    |||||||||||||||||||||||| ||||||||| || |||||||| ||||||||||||    
T  16831096 caatggttaagaaaactataaatataaaatttgttttaaaaatataaattttgactttt 16831154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 2908206 - 2908264
Alignment:
Q  46 caatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    ||||||||||| |||||||||||| ||||||||| ||||||||||| ||||||| ||||    
T  2908206 caatggttaaggaaactataaatagaaaatttgtcttgaaaatataaattttgattttt 2908264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 48524612 - 48524552
Alignment:
Q  45 acaatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgacttttt 105  Q
    |||||| ||||| |||||||||||||||||||||||| |||||||||  |||||| |||||    
T  48524612 acaatgattaagcaaactataaataaaaaatttgtatagaaaatataagttttgatttttt 48524552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 34458793 - 34458840
Alignment:
Q  44 gacaatggttaagaaaactataaataaaaaatttgtattgaaaatata 91  Q
    |||||||||||||||||| |||||| |||||||||| |||||||||||    
T  34458793 gacaatggttaagaaaaccataaatgaaaaatttgtcttgaaaatata 34458840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 55090895 - 55090840
Alignment:
Q  49 tggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    |||||||| ||||||||||| |||||||||| |||||||||||  |||||||||||    
T  55090895 tggttaaggaaactataaatgaaaaatttgtcttgaaaatataagttttgactttt 55090840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 32325154 - 32325084
Alignment:
Q  34 gtgtcttgaagacaatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    ||||||| | ||||||| |||  ||||||||| ||||||||||||| |||||||||||  |||||||||||    
T  32325154 gtgtcttcatgacaatgcttactaaaactatagataaaaaatttgtcttgaaaatataatttttgactttt 32325084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 48400986 - 48400945
Alignment:
Q  56 gaaaactataaataaaaaatttgtattgaaaatatatatttt 97  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  48400986 gaaaactataaataaaaaatttgttttgaaaatataaatttt 48400945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 53145251 - 53145202
Alignment:
Q  42 aagacaatggttaagaaaactataaataaaaaatttgtattgaaaatata 91  Q
    ||||||||||||||| |||||||||||||||||||| |  ||||||||||    
T  53145251 aagacaatggttaaggaaactataaataaaaaatttatcatgaaaatata 53145202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 28299283 - 28299343
Alignment:
Q  44 gacaatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    ||||||||||||| ||| |||||||| ||||||| |||||||||||||  ||||| |||||    
T  28299283 gacaatggttaaggaaattataaatagaaaatttatattgaaaatataagttttgtctttt 28299343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 53142900 - 53142841
Alignment:
Q  45 acaatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    |||||||||||| || |||||||||||||||||||  ||||||||||  |||| ||||||    
T  53142900 acaatggttaaggaagctataaataaaaaatttgtcatgaaaatataagttttaactttt 53142841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 34236299 - 34236253
Alignment:
Q  45 acaatggttaagaaaactataaataaaaaatttgtattgaaaatata 91  Q
    |||||||||||  ||||||||||||||||||||||  ||||||||||    
T  34236299 acaatggttaaagaaactataaataaaaaatttgtcctgaaaatata 34236253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 37992967 - 37992906
Alignment:
Q  49 tggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttttgattaa 111  Q
    ||||||| ||| ||||||||| || |||||| ||||||||||| ||||||| |||||||||||    
T  37992967 tggttaaaaaatctataaatagaagatttgttttgaaaatataaattttga-tttttgattaa 37992906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 45921335 - 45921389
Alignment:
Q  47 aatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgact 101  Q
    |||||||||| || ||||||||| ||||||||| |||||||||||  ||||||||    
T  45921335 aatggttaaggaatctataaatagaaaatttgtcttgaaaatataagttttgact 45921389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 4860234 - 4860177
Alignment:
Q  47 aatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    |||||||||| ||| || ||||| ||||||||| |||||||||||  |||||||||||    
T  4860234 aatggttaaggaaattacaaatagaaaatttgttttgaaaatataagttttgactttt 4860177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 40298089 - 40298025
Alignment:
Q  46 caatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttttgattaa 111  Q
    ||||||||||  |||||||||||| ||||||| | |||||||||||  |||||| |||||||||||    
T  40298089 caatggttaatgaaactataaatagaaaatttattttgaaaatataagttttga-tttttgattaa 40298025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 37992887 - 37992827
Alignment:
Q  131 ataaaaagttacttgttt-gattgtttaaccaatgccatgaggacacactttagcattctc 190  Q
    |||||||||||||||||| |||||||||||  ||| ||||||| |||  ||||||||||||    
T  37992887 ataaaaagttacttgttttgattgtttaactgatgtcatgagggcaccgtttagcattctc 37992827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 50101280 - 50101339
Alignment:
Q  51 gttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttttgattaa 111  Q
    ||||| ||| ||||||||||||||||||| || ||||||||  |||||| |||||||||||    
T  50101280 gttaaaaaatctataaataaaaaatttgtcttaaaaatataagttttga-tttttgattaa 50101339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 24937949 - 24937891
Alignment:
Q  46 caatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    ||||||||||| |||||||||||| ||||||||| || |||||||| ||||||||||||    
T  24937949 caatggttaaggaaactataaatagaaaatttgttttaaaaatatagattttgactttt 24937891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 28664542 - 28664587
Alignment:
Q  46 caatggttaagaaaactataaataaaaaatttgtattgaaaatata 91  Q
    ||||||||||| || ||||||||| |||||||||||||||||||||    
T  28664542 caatggttaaggaatctataaatagaaaatttgtattgaaaatata 28664587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 1112159 - 1112205
Alignment:
Q  58 aaactataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    |||||||||||| ||||||||| |||||| |||| ||||||||||||    
T  1112159 aaactataaatagaaaatttgttttgaaattataaattttgactttt 1112205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 8656417 - 8656355
Alignment:
Q  42 aagacaatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    ||||||||||||||| |||||||||||| ||||||||| || |||| |||  |||| ||||||    
T  8656417 aagacaatggttaaggaaactataaatagaaaatttgtcttaaaaaaataagttttaactttt 8656355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 47537536 - 47537479
Alignment:
Q  53 taagaaaactataaataaaaaatttgtattgaaaatatatattttgactttttgattaa 111  Q
    |||| ||||||||||| |||||||||| |||||||||||  |||||| |||||||||||    
T  47537536 taaggaaactataaatgaaaaatttgtcttgaaaatataagttttga-tttttgattaa 47537479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 39786445 - 39786505
Alignment:
Q  44 gacaatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    ||||||||||||| || ||||||||| |||| |||| |||||||||||  |||| ||||||    
T  39786445 gacaatggttaaggaatctataaatagaaaacttgtcttgaaaatataagttttaactttt 39786505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 3600228 - 3600170
Alignment:
Q  46 caatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||  |||||| ||||    
T  3600228 caatggttaagaaaactataaataaaatatttgtcttgaaaatataagttttgaatttt 3600170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 15139166 - 15139210
Alignment:
Q  47 aatggttaagaaaactataaataaaaaatttgtattgaaaatata 91  Q
    |||||||||| |||||||||||||||||||||| |||||||||||    
T  15139166 aatggttaaggaaactataaataaaaaatttgtcttgaaaatata 15139210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 16802146 - 16802087
Alignment:
Q  45 acaatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    ||||||||| |  |||||||||||| ||||||||| ||||||||||| ||||||||||||    
T  16802146 acaatggttcatgaaactataaatagaaaatttgtcttgaaaatataaattttgactttt 16802087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 6102946 - 6102888
Alignment:
Q  46 caatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    ||||||||||| || ||||||||| ||||||||| || ||||||||  |||||||||||    
T  6102946 caatggttaaggaatctataaatagaaaatttgtcttcaaaatataagttttgactttt 6102888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 29552443 - 29552389
Alignment:
Q  46 caatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgac 100  Q
    ||||||||||| |||||||||||| ||||||||| | | ||||||| ||||||||    
T  29552443 caatggttaaggaaactataaatagaaaatttgtttcgtaaatataaattttgac 29552389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 75
Target Start/End: Complemental strand, 5471343 - 5471314
Alignment:
Q  46 caatggttaagaaaactataaataaaaaat 75  Q
    ||||||||||||||||||||||||||||||    
T  5471343 caatggttaagaaaactataaataaaaaat 5471314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 12036308 - 12036361
Alignment:
Q  51 gttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    |||||| || ||||||||| ||||||||| |||||||||||  |||||||||||    
T  12036308 gttaaggaacctataaatagaaaatttgtcttgaaaatataagttttgactttt 12036361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 34347000 - 34346955
Alignment:
Q  46 caatggttaagaaaactataaataaaaaatttgtattgaaaatata 91  Q
    ||||||||||| || ||| ||||||||||||||| |||||||||||    
T  34347000 caatggttaaggaatctacaaataaaaaatttgtcttgaaaatata 34346955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 35290758 - 35290697
Alignment:
Q  43 agacaatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    |||||||| ||||| || |||||| || ||||||||| || ||||||||| |||||||||||    
T  35290758 agacaatgattaagtaatctataattagaaaatttgtcttaaaaatatatgttttgactttt 35290697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 13835953 - 13835895
Alignment:
Q  47 aatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgacttttt 105  Q
    ||||||||||||||||||||||| ||||| ||| |||||||||||  ||||||||||||    
T  13835953 aatggttaagaaaactataaatagaaaatctgtcttgaaaatataagttttgacttttt 13835895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 1870489 - 1870547
Alignment:
Q  46 caatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    ||||||||||| |||||||||||| ||||||||| |||||||||||   ||||||||||    
T  1870489 caatggttaaggaaactataaatagaaaatttgtcttgaaaatataagctttgactttt 1870547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 5444499 - 5444545
Alignment:
Q  58 aaactataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    |||||||||||||||| ||||| |||||||||||  |||||||||||    
T  5444499 aaactataaataaaaattttgtcttgaaaatataagttttgactttt 5444545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 18857554 - 18857508
Alignment:
Q  44 gacaatggttaagaaaactataaataaaaaatttgtattgaaaatat 90  Q
    ||||||| |||||||||||||||||||||| ||||| || |||||||    
T  18857554 gacaatgattaagaaaactataaataaaaagtttgtcttaaaaatat 18857508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 29525729 - 29525667
Alignment:
Q  42 aagacaatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    |||| ||||||||||||| ||||||||||||| ||| | |  |||||||| ||||||||||||    
T  29525729 aagataatggttaagaaatctataaataaaaattttatctcaaaaatataaattttgactttt 29525667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 33635615 - 33635573
Alignment:
Q  62 tataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||    
T  33635615 tataaatgaaaaatttgtcttgaaaatataaattttgactttt 33635573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 13618290 - 13618234
Alignment:
Q  45 acaatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgact 101  Q
    |||||||||||||||| |||||||| |||| |||| || ||||||||  ||||||||    
T  13618290 acaatggttaagaaaattataaatataaaaattgtcttaaaaatataagttttgact 13618234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 9213040 - 9213081
Alignment:
Q  47 aatggttaagaaaactataaataaaaaatttgtattgaaaat 88  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  9213040 aatggttaagaaaactataaataaaaaatttgtcttgaaaat 9213081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 6770949 - 6770894
Alignment:
Q  49 tggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    |||||||| |||||||||||| ||||||| | ||||||||||| ||||||||||||    
T  6770949 tggttaaggaaactataaatagaaaatttatcttgaaaatataaattttgactttt 6770894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 32800325 - 32800259
Alignment:
Q  44 gacaatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttttgattaa 111  Q
    ||||||||||||| |||||||||||| ||||||||| || ||||||||  |||||| |||||||||||    
T  32800325 gacaatggttaaggaaactataaatagaaaatttgtcttaaaaatataagttttga-tttttgattaa 32800259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 31160844 - 31160786
Alignment:
Q  46 caatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    ||||||||||| ||| |||||||| ||||||||| || |||||||| ||||||||||||    
T  31160844 caatggttaaggaaaatataaatagaaaatttgtcttaaaaatataaattttgactttt 31160786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 27618 - 27558
Alignment:
Q  44 gacaatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    ||||||| |||||  ||||||||||||||||||||| || ||||||||  |||||||||||    
T  27618 gacaatgattaagggaactataaataaaaaatttgtctttaaaatataagttttgactttt 27558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 11065862 - 11065920
Alignment:
Q  46 caatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    ||||||||||| ||||||||| || ||||||| | |||||||||||  |||||||||||    
T  11065862 caatggttaaggaaactataattataaaatttctcttgaaaatataagttttgactttt 11065920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 39993497 - 39993451
Alignment:
Q  45 acaatggttaagaaaactataaataaaaaatttgtattgaaaatata 91  Q
    ||||||||||||||| ||| ||||||||| ||||| |||||||||||    
T  39993497 acaatggttaagaaatctacaaataaaaattttgtcttgaaaatata 39993451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 34382628 - 34382673
Alignment:
Q  46 caatggttaagaaaactataaataaaaaatttgtattgaaaatata 91  Q
    ||||| |||||||||||||||||||||||||| | || ||||||||    
T  34382628 caatgattaagaaaactataaataaaaaatttatcttaaaaatata 34382673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 91
Target Start/End: Complemental strand, 41936251 - 41936218
Alignment:
Q  58 aaactataaataaaaaatttgtattgaaaatata 91  Q
    |||||||||||||||||||||| |||||||||||    
T  41936251 aaactataaataaaaaatttgtcttgaaaatata 41936218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 48375361 - 48375305
Alignment:
Q  44 gacaatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgac 100  Q
    |||||| ||||||||||||||||||| |||| |||| | |||||||||  |||||||    
T  48375361 gacaatagttaagaaaactataaatataaaaattgtctagaaaatataagttttgac 48375305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 18008 - 18069
Alignment:
Q  43 agacaatggttaagaaaactataaataaaaaatttgtattgaaaatatatattttgactttt 104  Q
    ||||| |||||||| |||||||||||| ||||||| | || ||||||||  |||||||||||    
T  18008 agacattggttaaggaaactataaatagaaaatttatcttaaaaatataagttttgactttt 18069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University