View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_high_54 (Length: 309)
Name: NF2014_high_54
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_high_54 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 98 - 301
Target Start/End: Original strand, 8449133 - 8449336
Alignment:
| Q |
98 |
aatgtggaaccccgtttgttgatgaatcataattcccaccaccattcactaacacaagacaacatcattagcacaaccctatacatgtccgtttcttata |
197 |
Q |
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| T |
8449133 |
aatggggaaccccgtttgttgatgaatcataattcccaccaccattcactaacacaagacaacatcattagcacaaccctatacatgtccgtttcttata |
8449232 |
T |
|
| Q |
198 |
tacccttgcttgcttcatcaaactcaagccctaccctattcatgtgttttttcttttaccttatcaaagccaaactctcgtcataatcatttgtttttct |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
8449233 |
tacccttgcttgcttcatcaaactcaagccctaccctattcatgtgttttttcttttaccttatcaaaaccaaactctcatcataatcatttgtttttct |
8449332 |
T |
|
| Q |
298 |
tctc |
301 |
Q |
| |
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|||| |
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|
| T |
8449333 |
tctc |
8449336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 32227000 - 32226944
Alignment:
| Q |
139 |
ccattcactaacacaagacaacatcattagcacaaccctatacatgtccgtttctta |
195 |
Q |
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||||||||||||||||||||||||||||| |||| ||| ||| ||||||||||||| |
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| T |
32227000 |
ccattcactaacacaagacaacatcattaaaacaagcctctacctgtccgtttctta |
32226944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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