View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2014_high_56 (Length: 303)

Name: NF2014_high_56
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2014_high_56
NF2014_high_56
[»] chr2 (1 HSPs)
chr2 (1-295)||(12265577-12265871)


Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 12265871 - 12265577
Alignment:
Q  1 taagaagatttgtgatttttagtacttgatgagaaaatgttaagcacatgatctatatttatagccaaaacttttaataatacatttattgtttaaaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12265871 taagaagatttgtgatttttagtacttgatgagaaaatgttaagcacatgatctatatttatagccaaaacttttaataatacatttattgtttaaaaga 12265772  T
Q  101 ttctttttacactcatttaaaatgtttgtctttttgcatttaatgtatcacaatttcttttattaaaaagtttaaacaattaataaatccattttttcnn 200  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||      
T  12265771 ttctttttacactcatttaaaatgtttgtccttttgcatttaatgtatcacaatttcttttattaaaaagttaaaacaattaataaatccattttttcaa 12265672  T
Q  201 nnnnnnttaattaattttataaggaaaatgatattcatttttgcgacannnnnnnnatacaagagtgacttattttgtggttcaatgagtataat 295  Q
          |||||| |||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  12265671 aaaaaattaattgattttataaggaaaatgatattcatttttgcgacattttttttatacaagagtgacttattttgtggttcaatgagtataat 12265577  T

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