View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_high_58 (Length: 295)
Name: NF2014_high_58
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_high_58 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 40 - 196
Target Start/End: Original strand, 2675982 - 2676137
Alignment:
| Q |
40 |
taactggaggtgtcttctaatgttagaagaaacctccagtttactctaaaacaaaaagaatatatgaatttttattcacttttttatctattagttttct |
139 |
Q |
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| T |
2675982 |
taacaggaggtttcttcgaatgttagaagaaaccttcagtttactctaaaacaaaaaaaatatatggatttttatttactttt-tatctattagttttct |
2676080 |
T |
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| Q |
140 |
aatcaatcttaagttggatttgtcttttaatttagaaataaaaaattaccgatgtgg |
196 |
Q |
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| T |
2676081 |
aatcaatcttaagttggatttgtcttttaatttagaaataaaaaattaccgatgtgg |
2676137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 2676344 - 2676381
Alignment:
| Q |
232 |
gatttccaaggacaggggtttgttaacccaggttcaga |
269 |
Q |
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| T |
2676344 |
gatttccaaggacaggagtttgttaacccaggttcaga |
2676381 |
T |
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