View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_high_62 (Length: 284)
Name: NF2014_high_62
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_high_62 |
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| [»] scaffold0025 (2 HSPs) |
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Alignment Details
Target: scaffold0025 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 126 - 265
Target Start/End: Complemental strand, 66460 - 66319
Alignment:
| Q |
126 |
gtgattgattatgttgaacaa--ttccttgttttttggtttgtagggaaagttttcatatattggttggggacagagccatttttatacattacagaccc |
223 |
Q |
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| T |
66460 |
gtgattgattatgttgaacaaaattcattgttttttggtttgtagggaaagttttcatatattggttggggacagagccatttttatacattacagaccc |
66361 |
T |
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| Q |
224 |
tgaattcttgaagaaaatgtccacaaaggttttggccaagac |
265 |
Q |
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| T |
66360 |
tgaattcttgaagaaaatgtccacaaaggttttggccaagac |
66319 |
T |
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Target: scaffold0025; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 66577 - 66509
Alignment:
| Q |
11 |
caaaggaaattagaggccaaaagaaaag-aaaccctctcctttcgtcgccaaaattgaagacaaacttc |
78 |
Q |
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| T |
66577 |
caaaggaaattagaggcaaaaaaaaaaataaaccatctccttttgtcgccaaaattgaagacaaacttc |
66509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 29801954 - 29801917
Alignment:
| Q |
210 |
tacattacagaccctgaattcttgaagaaaatgtccac |
247 |
Q |
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| T |
29801954 |
tacattgcagaccctgaattcttgaagaaaatgtccac |
29801917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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