View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2014_high_65 (Length: 276)
Name: NF2014_high_65
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_high_65 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 45269335 - 45269078
Alignment:
| Q |
1 |
tataagatatataaaaacagaaactacaggaacaatctataactcaaattggcttacaagctttccatgatgaaggttttgagtaagtatgatcttgaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45269335 |
tataagatatataaaaacagaaactacaggaacaatctataactcaaattggcttacaagctttccatgatgaaggttttgagtaagtatgatcttgaag |
45269236 |
T |
|
| Q |
101 |
aagtgaactggcttcgctcgaggaattttgttagccatgaagaagtagcttaacataaaagtataaaaccttatgaatgactgagtagtgagtactgtct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45269235 |
aagtgaactggcttcgctcgaggaattttgttagccattaagaagtagcttaacataaaagtataaaaccttatgaatgactgagtagtgagtactgtct |
45269136 |
T |
|
| Q |
201 |
gtaatgaagtttagattgacaataaaagcaaagaggaatactaaactatggcttttca |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45269135 |
ataatgaagtttagattgacaataaaagcaaagaggaatactaaactatggcttttca |
45269078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 16867577 - 16867523
Alignment:
| Q |
51 |
ggcttacaagctttccatgatgaaggttttgagtaagtatgatcttgaagaagtg |
105 |
Q |
| |
|
|||||||||| ||||| | |||||| ||||||| ||||||||||||||| ||||| |
|
|
| T |
16867577 |
ggcttacaagttttccttcatgaagattttgagcaagtatgatcttgaaaaagtg |
16867523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 16872337 - 16872283
Alignment:
| Q |
51 |
ggcttacaagctttccatgatgaaggttttgagtaagtatgatcttgaagaagtg |
105 |
Q |
| |
|
|||||||||||||||| | |||||| ||||||| |||||| |||||||| ||||| |
|
|
| T |
16872337 |
ggcttacaagctttccttcatgaagattttgagcaagtattatcttgaaaaagtg |
16872283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 16862187 - 16862123
Alignment:
| Q |
51 |
ggcttacaagctttccatgatgaaggttttgagtaagtatgatcttgaagaagtgaactggcttc |
115 |
Q |
| |
|
|||||||||||||||| | ||||| ||||||| |||||| |||||||| ||||| | ||||||| |
|
|
| T |
16862187 |
ggcttacaagctttccttcctgaagattttgagcaagtattatcttgaaaaagtggattggcttc |
16862123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 17605112 - 17605064
Alignment:
| Q |
51 |
ggcttacaagctttccatgatgaaggttttgagtaagtatgatcttgaa |
99 |
Q |
| |
|
|||||||||| ||||| || |||||||||||| ||||||||||||||| |
|
|
| T |
17605112 |
ggcttacaaggtttccttggagaaggttttgagcaagtatgatcttgaa |
17605064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University