View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_high_75 (Length: 254)
Name: NF2014_high_75
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_high_75 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 42229804 - 42229545
Alignment:
| Q |
1 |
ctccatcctctatgtcctcctatgtgtatctgcttgcaagccaacctattcataatgcatagcaaatgtataatagttagtatgtgtctggtgttcgtgt |
100 |
Q |
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| T |
42229804 |
ctccatcctctatgtcctcctatgtgtatctgcttgcaagccaacctattcataatgcatagcaaatgtattatagttagtatgtgtctggtgttcgtgt |
42229705 |
T |
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| Q |
101 |
ttgtgtttt--------------------cataataacgaatgattagaggtttaatgtaccccatggctagagcagtaacagcccaagcaatgactgat |
180 |
Q |
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| T |
42229704 |
tcgtgttttgtgtctggtgttcgtgttttcataataacgaatgattagatgtttaatgtaccccatggctagagcagtaacagcccaagcaatgactgat |
42229605 |
T |
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| Q |
181 |
gtagctccagcagatgctaaactgtcactcctccaaaacctgagatgatttgcacccata |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42229604 |
gtagctccagcagatgctaaactgtcactcctccaaaacctgagatgatttgcacccata |
42229545 |
T |
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